AMCG00019984 (LOC102792584)


Basic Information

Item Value
gene id AMCG00019984
gene name LOC102792584
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5207773 ~ 5230138 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019984
GAATGACCGTTACCCCGGAAGAGGAAGTGGGGCGCAGTGTTTTCAATGCGCTGTCCAGGGCTGCCGGTCGCTTCAAGCGGAGATCACATACGAGCTGCTGTCTTTTGCGCTGGAGGGATGCCTGCAGAAAGTTCACGATGGGATACATTGGAGGCTCTGAAAAACTCCGACAAGGGCAAACTGAAATATCACCCGGGCTGGCTGCAGAAAGGCGAGGACCTGTTGGCAGGGTGCAATGCACCCCCCAGTCTGTCCGCCTTCTCTGGTCTAGTCTTGAAGAGACTAAGTCCAAAGCTGCTAGTGAAGACTTCCTCTCTGAGCTCAGACTCCAGCCCTGGTCTGTTTGAAGATGTCCTTGTCTCTTCCAACTCTGTGCCGTCCAGCCCCAGGCTTTCAATCAAACCAAACCTGCagtcccctctctccctccagcagCCCCCCAGCCTAGAGTGTGAGGAAACCACGGAGGAGAAGATGCCACCAGAGCCCAGGCCCTCCATCTCCATGCTCTCTCCCAGGGCATCGCAGGTAGAAGGTTGCATCCGCATCTGTGAGGAGAACCACCGATCCAGGGCAAAGgcCGAGCTGAGCCAGCGGCAGGAGCTGCAGGACCGGCTGGTGGAGTCGGTAGCCTGCCGGGAGTCGGAGCAATTGAAACGATTTGAGGAGTTCATGGAGCTCAAACAGAGACAGGAGTACCAGATCATGAGAGACATGATGGAAAGAGAGACCCAAGAGAGTTTGGGGCGCCAGGAGAAGCTCAAAGAGGAACATCGCCACAGAATGAAGATCCTGAACCTGCGGCTGCGGGAGGCGGAGCAGCAGCGGTTGCGGGAGGCCGAGCTGGAGCGGCAGCGGCAGGCAGAGGGTCGAGAGCGGCTGCGCGCGCTCAACGTCATCCAGGAGGAAGTGCTCCAGCTCAATCAACTGCTGGAACCCGGTGCTTCCCAGGCCCCACTCGACCTGTCCGCCTTCATTACCCGTGGCAACCAGCTCTGCGGCCAAGTCTCGGAGGTCATCCGCACCACTGCCGAGGGAGGGTTCCCCAGCCCAGAGGACATGTCAGTGGCAGAGCGGGCGCTGCAGGAGATGCGTGCCGTGATCGGAACCATGCAGCAGGAGGTTGTGCTGGcccaggagaggaggaggaaggaggaggcAGAGCAGGAGGAGCGGCAGAAGCAGATTGAGTTGCAGAAACAACAGGGGGCACAGAAGAGCGCCACACCCCCGACCCAGCGGAGGCAGAGGAAAGAAGGACTCCAGACGAAGGCAGATGAAAGCACCATGAAGTGGTACCAGGAGATACAGGACGCATCCAATCATTGTGCTGCGTCATTTGAAGACCTCAACAACACTAAGGACATGCAGACAAAGAAACTAAGAATGGAGCTGCAGAAAGCGGCCTCAATCCCCGTCAGCCAGATCTCCAGTTCCAAGTTGCGGGAGGTGTTTGACAAAATTGACAAGCTGCTGTCCGGGAAGCCAGTTCAGTCTGGGGGCAGGTCTGTCTCTGCTACACATCACCCACATGGACTTGACTTTGTCAGCTATAAACTGGCAGAAAAATTTGTGAAACAAGGGGAAGAGGAGGTGGCATCGCATCACGAGGCTGCTTTCCCCATTGCTGTAGTTGCCTCGGGGATCTGGGAGCTGCACCCCAAGGTGGGTGACCTCATCCTGGCCCACTTGCACAAGAAGTGCCCCTATGCAGTGCCCTACTACCCCCCCATGAAGGATGGCACCTCAGTTGAGGACTATCAGAGGATTCTGGGATATCGTGTGGGGGACTCGGGCGTGGAGGCTCAGGACAGCTTCCTGAAGAGGATGTCTGGGATGATTCGCCTGTATGCTGCCATCATACAGCTGCGCTGGCCTTATGGCAACAAACATGGGGCTGATCCTCATGGTTTGAACCATGGCTGGCGCTGGCTGGCCCAGATGTTAAACATGGAACCTCTGGCTGATGTCACAGCCACACTACTTTTTGATTTCCTAGAGGTGTGTGGTCATGCCTTAATGAAGCAGTACCAAGGGCAGTTTTGGAAGCTAATCCTTTTGATTAAAGAGGACTACTTCGCCAGGATTGAGGCTATCACCAGCACTGGGCAGATGGGCTCTGTCATGCGGCTGAAGCAGTTCCTGGAGACATGCCTGAGGCGGCGAGAAATTCTTCCTCCCAAAGGCCAGCTGAGCTCATCTTTTTGGAGGTCTTGAAGGGTAGGCGGGGAGGCCCTTGGACAGCAGGGCCCTAATTGAAAACATCTGTCTCACAGCTTGGGAATTAACATCCTGCTCCTTTATGAAGTCACTGAAAATCCAATACCTCTTACATGAAATGGGAATATGGTGTTACAGTCTTGATGCAATACAGTATATCGTACGTGGGAGAGAAGCAAAGGAGGGCATGAACTATACTATGGAATATGTGAGcctgtaaaataacattataccTGTGTTTTAGAAGCCTTTCAATTTAGTGTGTAGAAATTGTAAGCAATCCCAATCTATTTGTGAGCTTAAATCATGAATCTGCTTAGCTGTCTTGCATATATTGatcaaattgaaatataatcCAGTTTTATACAATGTacaagacattttgtttttggaagcaaactgtttttcagttttacttttttgtgagAGGGGAGCTCCACATCACTAactgtagattttatttttgtttgttttttgttacagcaacattgtacattattattgttagccATGACAGTTGTTGGTCGAGCTCACAGGAAAGATCATCCATTTAAAAGCTCAATGAACTGTCTCTCCTACAATCTCTTAATTTTGACTGGGGGTTTCAGATTCCCTGTTCCCCTTTGTCTTTAtaaattttgcattttatttctgtttttatttttaaaggtttgtgTAActaagtttacatttttgtaaattctGACCTCACCCTCCACCAACTGTTTCTGACTgaagaatacttttttttttttttaatacatatttattctgaCAAAGAACAGCGCTTGTCCAAAGCTCAGTGCAATTAAGCTGTacgtttattttcatgtgtggAATATTAGCTTCTGTTCCTATTTAATTGTACattgtttgtatataaatacattattttgttttataaaattgGAATACAGTGTCCATAATATGTCTATAAGGTGTAATTTAGTCTCTTTCTATGAGTTAGGGCTCTAGCAGTACAATAAATCGTATACTAGGAGACGAATCTGAATTAGGGCAGAAGTGCCAGGAGGCTTTAATGTACCTGAAGAACTGAATTCCGGGATCTAGAACATGGCAGTAGTCTTAGTCAGCACATTCTATGCTCGAATAAGAGTCAACAACATCAGTGGAATATGCATATCTGGCAGTGGAAATAGACTGAGAAATCAATACCATTAAATCTAAAAGTC

Function

NR:

description
PREDICTED: nucleoporin GLE1-like, partial

GO:

id name namespace
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K18723 GLE1; nucleoporin GLE1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019984 True 3413 mRNA 0.49 16 5207773 5230138

Neighbor

gene id symbol gene type direction distance location
AMCG00019985 sptan1 coding downstream 893 5167366 ~ 5206880 (-)
AMCG00019982 NA coding downstream 48453 5158359 ~ 5159320 (-)
AMCG00019983 NA coding downstream 54720 5132046 ~ 5153053 (-)
AMCG00019974 naif1,LOC107754425,LOC107559603,LOC107560040 coding downstream 138734 5065640 ~ 5069039 (-)
AMCG00019975 NA coding downstream 201790 4992636 ~ 5005983 (-)
AMCG00019987 NA coding upstream 4092 5234230 ~ 5234454 (-)
AMCG00019989 NA coding upstream 67315 5297453 ~ 5301869 (-)
AMCG00019990 NA coding upstream 145728 5375866 ~ 5380964 (-)
AMCG00019994 rgs3a coding upstream 338380 5568518 ~ 5574686 (-)
AMCG00019996 NA coding upstream 374305 5604443 ~ 5615456 (-)
G60102 NA non-coding downstream 40483 5166359 ~ 5167290 (-)
G60101 NA non-coding downstream 42285 5165267 ~ 5165488 (-)
G60100 NA non-coding downstream 43778 5163764 ~ 5163995 (-)
G60099 NA non-coding downstream 45252 5162006 ~ 5162521 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding downstream 50580 5153058 ~ 5157193 (-)
G60179 NA non-coding upstream 241181 5471319 ~ 5523619 (-)
G60230 NA non-coding upstream 760807 5990945 ~ 5991184 (-)
G60231 NA non-coding upstream 765331 5995469 ~ 5995688 (-)
G60235 NA non-coding upstream 806427 6036565 ~ 6040665 (-)
G60237 NA non-coding upstream 825411 6055549 ~ 6055822 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 146261 5012444 ~ 5061512 (-)
G59806 NA other downstream 1727664 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 2021808 3166237 ~ 3185965 (-)
G59720 NA other downstream 2096426 3107801 ~ 3111347 (-)
G59712 NA other downstream 2173438 3031856 ~ 3034335 (-)
G60118 NA other upstream 33776 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 46524 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 61452 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 929439 6159577 ~ 6172474 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 1220484 6450622 ~ 6461428 (-)

Expression


Co-expression Network