AMCG00020017 (arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248)


Basic Information

Item Value
gene id AMCG00020017
gene name arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6450622 ~ 6461428 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020017
ATGGCCAAGAACACCCTGTCGTCGCGGTTCCGGAAGGTGGACATCGATGAGTACGACGAGAACAAATTCGTGGACGAGCAGGAGGAGGCGGCCGAGCAGCAGGGGCCGGACGCCGCCGAGgagcGGGCACAGGGAATAGTACTGCGGGTCCTGACGTCCTTTAGAAGCAGCGAGATTGAGCCAGCTGTGAAATCTTTAGACAAGAACGGAGTTGACTTGTTAATGAAGTACATTTATAGAGGCTTTGAGAAGCCCTCAGAAAACAGCAGCGCAATATTGCTGCAGTGGCATGAAAAGGCTTTTGCGGCGGGCGGCCTAGGATCCATTGTTAGAGTTCTCACAGCCAGAAAGACTGTTTGAAAGACTGTAAAACTCTGGCCCAAGACGACGACAAAGCGGAGAACGAAAAAAAACGGACAGAGCCAGGGACGCGGTCTTTGAAGGGAACGATTATTATACAGTTATGATGCCATTCTTCCAGAATTCTAAATTTatgaaagatttaaaagaaaatattattttgagtgaagaaatacaaatgtatgtttgaaTGCTTTTTATCTATTGAAGTGAGGGGGACATTTCTGgtatttaatgtactttttttttttccttcttgatCATATGCAAGTTCTTGCACATCCTCCCATTCCCTTCctatcttgttttgtttgtttttacttcagaGAGGTTTtaaaagtggggaaaaaaaaacaaatttaaaaataaaaaactgacaATGACTGCCTGGGGGGGAAAGCCGCCCATGCAGTGCCGGCAAGCATCACCAGATGAATTACTGTATGACGTACAGAAGGGTACATGGCTGGTGACTTATTGGACTGGCTCAGTATTGAAGGATAgattttattcttattgtttttcttttctcactCATTTTTTGTACAGAGAGaagtacatttaatataaagcaATGGTGATGATTTGAATAGTAGGGTGATTTCAGTGTAAAGTGCCTGCTGCAATAAAGCTCTTGGATTATCTTTATTGAAA
>TU75483
CCTCATCCAATGCACAGGGGACATGTTGACCGCTTTTCACGCAGTTCTGAGGAATCCTCCAATCAACACCAAGAACCAGGCAGTAAAGgagcGGGCACAGGGAATAGTACTGCGGGTCCTGACGTCCTTTAGAAGCAGCGAGATTGAGCCAGCTGTGAAATCTTTAGACAAGAACGGAGTTGACTTGTTAATGAAGTACATTTATAGAGGCTTTGAGAAGCCCTCAGAAAACAGCAGCGCAATATTGCTGCAGTGGCATGAAAAGGCTTTTGCGGCGGGCGGCCTAGGATCCATTGTTAGAGTTCTCACAGCCAGAAAGACTGTTTGAAAGACTGTAAAACTCTGGCCCAAGACGACGACAAAGCGGAGAACGAAAAAAAACGGACAGAGCCAGGGACGCGGTCTTTGAAGGGAACGATTATTATACAGTTATGATGCCATTCTTCCAGAATTCTAAATTTatgaaagatttaaaagaaaatattattttgagtgaagaaatacaaatgtatgtttgaaTGCTTTTTATCTATTGAAGTGAGGGGGACATTTCTGgtatttaatgtactttttttttttccttcttgatCATATGCAAGTTCTTGCACATCCTCCCATTCCCTTCctatcttgttttgtttgtttttacttcagaGAGGTTTtaaaagtggggaaaaaaaaacaaatttaaaaataaaaaactgacaATGACTGCCTGGGGGGGAAAGCCGCCCATGCAGTGCCGGCAAGCATCACCAGATGAATTACTGTATGACGTACAGAAGGGTACATGGCTGGTGACTTATTGGACTGGCTCAGTATTGAAGGATAgattttattcttattgtttttcttttctcactCATTTTTTGTACAGAGAGaagtacatttaatataaagcaATGGTGATGATTTGAATAGTAGGGTGATTTCAGTGTAAAGTGCCTGCTGCAATAAAGCTCTTGGATTATCTTTATTGAAAGCcag

Function

symbol description
arpc5la Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Is expressed in notochord. Orthologous to human ARPC5L (actin related protein 2/3 complex subunit 5 like).
arpc5l Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion.

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020017 True 1014 mRNA 0.42 3 6450627 6461428
TU75483 False 987 TUCP 0.40 3 6450622 6453598

Neighbor

gene id symbol gene type direction distance location
AMCG00020011 NA coding downstream 105930 6342787 ~ 6344692 (-)
AMCG00020013 NA coding downstream 117255 6329008 ~ 6333367 (-)
AMCG00020012 golga2 coding downstream 121992 6307533 ~ 6328630 (-)
AMCG00020005 NA coding downstream 250588 6186231 ~ 6200034 (-)
AMCG00020003 NA coding downstream 268961 6178256 ~ 6181661 (-)
AMCG00020018 olm2a,olfml2a,LOC104951789,LOC107554414 coding upstream 107627 6569055 ~ 6591103 (-)
AMCG00020024 NA coding upstream 408145 6869573 ~ 6896989 (-)
AMCG00020025 NA coding upstream 437456 6898884 ~ 6923473 (-)
AMCG00020026 NA coding upstream 525108 6986536 ~ 7008056 (-)
AMCG00020027 lhx2,lhx2b coding upstream 651385 7112813 ~ 7126623 (-)
G60345 NA non-coding downstream 5889 6443275 ~ 6444733 (-)
G60317 NA non-coding downstream 91683 6300656 ~ 6358939 (-)
G60311 NA non-coding downstream 174590 6274269 ~ 6276032 (-)
G60271 NA non-coding downstream 295398 6154918 ~ 6155224 (-)
G60262 NA non-coding downstream 336474 6111349 ~ 6114148 (-)
G60356 NA non-coding upstream 25881 6487309 ~ 6489377 (-)
G60377 NA non-coding upstream 217750 6679178 ~ 6695776 (-)
G60387 NA non-coding upstream 336481 6797909 ~ 6800750 (-)
G60540 NA non-coding upstream 1111169 7572597 ~ 7572831 (-)
G60610 NA non-coding upstream 1391573 7853001 ~ 7854373 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 278148 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 1157949 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 1172331 5276662 ~ 5278291 (-)
G60118 NA other downstream 1184697 5263914 ~ 5265925 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 1389110 5012444 ~ 5061512 (-)
G60348 NA other upstream 2120 6463548 ~ 6466586 (-)
AMCG00020019 NA other upstream 5843 6467271 ~ 6471434 (-)
G60516 NA other upstream 979375 7440803 ~ 7562592 (-)
AMCG00020066 fam69b,fa69b other upstream 2351357 8812785 ~ 8828109 (-)
G60746 NA other upstream 2377783 8839211 ~ 8839945 (-)

Expression


Co-expression Network