RNA id: TU75166


Basic Information

Item Value
RNA id TU75166
length 1897
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G60088
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5153058 ~ 5157193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAGattctataattatttttaatagatgtGGGAGTTGGAAATGGTGCATGGGACTTCAGCAAGAGATTGCCACTAGTTTTCCAATGCAAGTCTTCCTGGTAATAAACTTGTCTTAGGGATGGCATGGACAGAAGAGAGACTTCAGGAGAACAAGGAGACGgagcacaaaaaaataaaaaacaaaaacgcatCTTGCTCCCAGGGATTCAAAGATAATATAAAGGGAAAAATTGGAAGGGAGTGGGGTGGAATCTGTCCTGTTCGGGTTTAATCGTCTTCACCATCATCATCCTGAAAGAAAGTAAAGATGCACTTTTACTCTTTGCTTTTCATGTAGTTTTCTTGAATGAGCGTAATGTTTGCCCAAGTCCTTTTAAGTCCAGTGAAAATGCaccttcataaaataaatcctatagatcaaattcaatcaaaatagtttattccCCAATTAATGATTTATGAACAAACATTTCCAAGAGGGAACTACAATCCCTAGTATCTTACCTCCCCTTCTTCCCCATCATCATCCTCTtcatcttcctctccttcttcctcaTCTCCTTCCTCATCAATGTCCTCTAGGCCTTCCTCCTCTTcgtcatcgtcatcatcatcttcaccctctccctcctcgTCGTCCATATCTGGGACCAAGTAGTACTGTAAAGGATTTGGCCAGATGTCGTCCTTGATGACCTCTCCCAGCTCATCGGCTCCTGCGTCAGAGTGGTCTGTGAACCAGGTGAAGAAACTCTCTGGCTCTTCGTGTTGCCTCTTCCTGCCAGCTTTGTTCTGCGTCTGGCTGGAGCGCTTGGTCAGGTCCTGAAATCGCAATGAGATTAAATACTTTAATGCCCAAGACAACTTTTGCCATTTTCTTCAATTCAAGTTCCCTTGGAAACTTAACTGCATAGTAAATGACTATTGGCACACTTTTATAAATAGATATACAAGGTTTATATCTGAATTAATGGTTAGCTGTTCCAGCGTTCTTGACACCTAAACAATGCCCTATCCAAAACATGTTGCACAGATGCAAATCATGATGCGTATATTCACCACTCATTAGGGACTTCATTAACTAGAAGTTATGAAGCACAATGGCTCCAACAACTTGCACAAGAATTCAATGTGAGAAACTGCTGTTTGGCTTCTAACAGGCTAAAGAGGGAAATacagaatgtaaaatgtacctGTAGCTGGAAcggtttgtgtatttatttttcctacatGTATAGATATGAAAGCATTGCTTACCTTTCCTGCTTTCCATTTGATTTCTGTTGACTTTGAGGATGGATCTCCACTTTCATTCAGGTGAAACTCTTTGgaaaggattttgttttcaaaataggGGTTTTCATCAAAGTAAAAATCTATTCTGTATCCTGACTTGATGTCTTCAAATTCTGTCACTTCAACTCTGGTCAGGTAATGAAGTGCTTCTTCATCTTCCTCTCCAAGTAGAGCAGAAACTGGtaaaaggagagggagggaaaggaaaaaaaaaaaactgagcagAAATACCTTCAAGTAAGCAGCACCCCCATTTCTCCCACTCGTACAAAAGCAATTCAAGAATGCTTGTGCAGATTTTACTAACAGACAATACTGTAATCTGCCTGAAATACAAGTtcttaaaacactttaaaaagcaTCTAGCCTTATACACCCTTCTATAAattgtacatgtattttgaaaactttgaagttttaaattgtttgaaaaCTAACCTTGTGGATGGTTGACGAACGTTGTGACCCAGAAGTTGGGGATTTTGGCGATCAGTTCCGATCTCTTCTGGAAGAATGGCTGGCGTAGTTTGTTGTACTTCTGTTCTACTTTTAAAATTTCCTCACTGGCCTGTTCATTCAATCTGGAAGAAAATATTAA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75100 lncRNA downstream 165953 4985681 ~ 4989055 (-) True G60034
TU75029 lncRNA downstream 306212 4844797 ~ 4848796 (-) True G59979
TU75008 lncRNA downstream 354739 4796726 ~ 4800269 (-) True G59963
TU75003 lncRNA downstream 399816 4750487 ~ 4755192 (-) True G59958
TU74984 lncRNA downstream 481399 4673284 ~ 4673609 (-) True G59941
TU75185 lncRNA upstream 4813 5162006 ~ 5162521 (-) True G60099
TU75186 lncRNA upstream 6571 5163764 ~ 5163995 (-) True G60100
TU75187 lncRNA upstream 8074 5165267 ~ 5165488 (-) True G60101
TU75188 lncRNA upstream 9166 5166359 ~ 5167290 (-) True G60102
TU75287 lncRNA upstream 314126 5471319 ~ 5523619 (-) True G60179
AMCG00019983 mRNA downstream 1955 5132046 ~ 5153053 (-) True AMCG00019983
AMCG00019974 mRNA downstream 85969 5065640 ~ 5069039 (-) True AMCG00019974
AMCG00019976 mRNA downstream 93496 5060491 ~ 5061512 (-) False AMCG00019976
AMCG00019975 mRNA downstream 149025 4992636 ~ 5005983 (-) True AMCG00019975
AMCG00019971 mRNA downstream 171797 4969190 ~ 4983211 (-) True AMCG00019971
AMCG00019982 mRNA upstream 1166 5158359 ~ 5159320 (-) True AMCG00019982
AMCG00019985 mRNA upstream 10173 5167366 ~ 5206880 (-) True AMCG00019985
AMCG00019984 mRNA upstream 50580 5207773 ~ 5230138 (-) True AMCG00019984
AMCG00019987 mRNA upstream 77037 5234230 ~ 5234454 (-) True AMCG00019987
AMCG00019993 mRNA upstream 119471 5276664 ~ 5277926 (-) False AMCG00019993
TU75113 other downstream 93731 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 1674899 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1971942 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1971942 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 2043661 3107801 ~ 3111347 (-) True G59720
TU75216 other upstream 106721 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 119469 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 134397 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1293429 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 1306355 6463548 ~ 6466586 (-) False G60348

Expression Profile