XLOC_031763 (acvr1bb)


Basic Information

Item Value
gene id XLOC_031763
gene name acvr1bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 2174082 ~ 2198683 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062227
gctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctattcatccatccatccatccatccatccatccatccatccatccatccagtctgtGTAATGCGCGTGCTCAGGGCGCGCTCTTATCTACTAGTGAGCGCGCGAGCGGCAACAGTATTCACGCGCATTCTCAGTGCAATGGGAGTCCTGTAAGGATGGACCCACGGCAAATCCTGCGAATTTTGATCGTTTTATCGGGATTGAACGGAGTATGTGATGCTCTGTTGTGTAACTGCACCGCTCCACACTGCGAGAGGGATGGCTTTAAGTGCGAGACGAACGGCGCGTGTGTGGCCTCCACCTCCGTCATTGAAGGACAGGAGCAACATGTGCGTCTCTGCATCCACAAGGAGAAGCTGGTTCCTCCAGGCCAGCCGTTCTACTGCCTCAGCGCTGAGGGTCTGATGAACACACACTGCTGCTACACCGACTACTGCAACAGCATCGACCTCAGGCTGCCAATCGTGACGAATGGGCCTGGTGCTGGGCAGGACTGGGGGCCGGTGGAGCTGACGGCGGTGGTGGCGGGCCCTGTGTTTGTGCTGTGTGTGCTGGTTCTGCTGGGACTCTTCCTCTTTCAGCACCACCAGCGGGCCTACGGGCACCGGCAGAGGCTGGAGGTGGAGGATCCCAGCACTGAGCACATGTTCCTGGCCAAGGACAAGACCCTGCAGGACCTCATCTATGACCTCTCCACCTCAGGATCAGGCTCAGGCCTGCCTCTGTTTGTGCAAAGGACCGTGGCTCGTACCATCGTCCTACAGGAGATCATCGGTAAAGGCCGCTTCGGTGAGGTGTGGAGAGGGAAGTGGAGAGGTGGAGACGTCGCAGTCAAGATCTTCTCCTCTCGGGAAGAACGATCCTGGTTTCGAGAAGCTGAAATCTACCAGACCATTATGTTGCGCCACGAGAACATTCTGGGCTTCATTGCTGCAGACAACAAAGATAACGGCACATGGACTCAGCTGTGGTTGGTGTCAGACTATCATGAGAACGGCTCTCTGTTTGACTATCTGAACCGATATTCAGTCACCATCGAGGGCATGATCAAACTGGCTCTGTCGGCTGCCAGCGGCCTGGCACATCTACACATGGAGATACTGGGCACTCAGGGTAAGCCTGGCATTGCTCACCGTGACCTAAAGTCTAAGAACATCCTGGTGAAGAAAAACTGCACATGTGCCATTGCTGACCTGGGCCTGGCAGTACGGCACGAGTCCATCACTGACACCATCGATATAGCTCCAAACCAGCGCGTCGGCACCAAGAGaTACATGGCTCCGGAGGTTCTGGAGGAGAGCATTAACATGAGGCACTTTGACTCTTTTAAATGTGCTGATATCTACGCTCTGGGTCTGGTGTACTGGGAAATCGCCCGCCGATGCAATGCTGGAGGTATTCATGAAGAATATCAGCTGCCCTACTATGACCTGGTGCCGTCAGATCCCTCCATAGAAGAGATGAGGAAAGTGGTGTGTGACCAGAGATTACGACCCAACATCCCCAACTGGTGGCAGAGCTACGAGGCGCTGCGTGTGATGGGGAAGATCATGCGTGAGTGCTGGTACGCGAACGGCGCGGCGCGTCTGACAGCTCTGCGCATCAAGAAAACCCTTTCACAGCTCAGCGTGGACGAGGATCTCAAAATCTGA
>TCONS_00062228
atcattttgacttcaactgtatatgcgaCACATGATTGAATACATCTGTGTCTGTTCTGTTGTGTTTGCAGCTCTGTTGTGTAACTGCACCGCTCCACACTGCGAGAGGGATGGCTTTAAGTGCGAGACGAACGGCGCGTGTGTGGCCTCCACCTCCGTCATTGAAGGACAGGAGCAACATGTGCGTCTCTGCATCCACAAGGAGAAGCTGGTTCCTCCAGGCCAGCCGTTCTACTGCCTCAGCGCTGAGGGTCTGATGAACACACACTGCTGCTACACCGACTACTGCAACAGCATCGACCTCAGGCTGCCAATCGTGACGAATGGGCCTGGTGCTGGGCAGGACTGGGGGCCGGTGGAGCTGACGGCGGTGGTGGCGGGCCCTGTGTTTGTGCTGTGTGTGCTGGTTCTGCTGGGACTCTTCCTCTTTCAGCACCACCAGCGGGCCTACGGGCACCGGCAGAGGCTGGAGGTGGAGGATCCCAGCACTGAGCACATGTTCCTGGCCAAGGACAAGACCCTGCAGGACCTCATCTATGACCTCTCCACCTCAGGATCAGGCTCAGGCCTGCCTCTGTTTGTGCAAAGGACCGTGGCTCGTACCATCGTCCTACAGGAGATCATCGGTAAAGGCCGCTTCGGTGAGGTGTGGAGAGGGAAGTGGAGAGGTGGAGACGTCGCAGTCAAGATCTTCTCCTCTCGGGAAGAACGATCCTGGTTTCGAGAAGCTGAAATCTACCAGACCATTATGTTGCGCCACGAGAACATTCTGGGCTTCATTGCTGCAGACAACAAAGATAACGGCACATGGACTCAGCTGTGGTTGGTGTCAGACTATCATGAGAACGGCTCTCTGTTTGACTATCTGAACCGATATTCAGTCACCATCGAGGGCATGATCAAACTGGCTCTGTCGGCTGCCAGCGGCCTGGCACATCTACACATGGAGATACTGGGCACTCAGGGTAAGCCTGGCATTGCTCACCGTGACCTAAAGTCTAAGAACATCCTGGTGAAGAAAAACTGCACATGTGCCATTGCTGACCTGGGCCTGGCAGTACGGCACGAGTCCATCACTGACACCATCGATATAGCTCCAAACCAGCGCGTCGGCACCAAGAGaTACATGGCTCCGGAGGTTCTGGAGGAGAGCATTAACATGAGGCACTTTGACTCTTTTAAATGTGCTGATATCTACGCTCTGGGTCTGGTGTACTGGGAAATCGCCCGCCGATGCAATGCTGGAGGTATTCATGAAGAATATCAGCTGCCCTACTATGACCTGGTGCCGTCAGATCCCTCCATAGAAGAGATGAGGAAAGTGGTGTGTGACCAGAGATTACGACCCAACATCCCCAACTGGTGGCAGAGCTACGAGGCGCTGCGTGTGATGGGGAAGATCATGCGTGAGTGCTGGTACGCGAACGGCGCGGCGCGTCTGACAGCTCTGCGCATCAAGAAAACCCTTTCACAGCTCAGCGTGGACGAGGATCTCAAAATCT
>TCONS_00062229
GGAGGAGAGCATTAACATGAGGCACTTTGACTCTTTTAAATGTGCTGATATCTACGCTCTGGGTCTGGTGTACTGGGAAATCGCCCGCCGATGCAATGCTGGAGGTATTCATGAAGAATATCAGCTGCCCTACTATGACCTGGTGCCGTCAGATCCCTCCATAGAAGAGATGAGGAAAGTGGTGTGTGACCAGAGATTACGACCCAACATCCCCAACTGGTGGCAGAGCTACGAGCTTCAGTCAAgcctaaaggggtagttcacacaataattaacattaactcatttaatttactctcccttaacTGGTTTCAAATGTTTCTGAGtatcttccttctgttgaacacaaattaagatgtttcgaagtatgttgaaaacctgtaaccattgactttgcattgtaggaaaaacaaatactgtaaagtcaatagttacaggttttcaat

Function

symbol description
acvr1bb Predicted to enable activin binding activity and activin receptor activity, type I. Predicted to be involved in several processes, including activin receptor signaling pathway; cellular response to growth factor stimulus; and protein phosphorylation. Predicted to act upstream of or within phosphorylation and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of activin receptor complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ACVR1B (activin A receptor type 1B).

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007399 nervous system development biological_process
GO:0016310 phosphorylation biological_process
GO:0048179 activin receptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016361 activin receptor activity, type I molecular_function
GO:0048185 activin binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004675 transmembrane receptor protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-9 Predicted to enable activin binding activity and activin receptor activity, type I. Predicted to be involved in several processes, including activin receptor signaling pathway; cellular response to growth factor stimulus; and protein phosphorylation. Predicted to act upstream of or within phosphorylation and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of activin receptor complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ACVR1B (activin A receptor type 1B).

Ensembl:

ensembl_id ENSDARG00000052142

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062227 False 1789 mRNA 0.53 9 2174082 2198168
TCONS_00062228 False 1502 mRNA 0.55 8 2190214 2198166
TCONS_00062229 True 446 mRNA 0.42 3 2195625 2198683

Neighbor

gene id symbol gene type direction distance location
XLOC_031762 tgm2b coding upstream 51596 2093206 ~ 2122486 (+)
XLOC_031761 quo coding upstream 81423 2030703 ~ 2092659 (+)
XLOC_031760 NA coding upstream 342603 1825214 ~ 1831479 (+)
XLOC_031759 NA coding upstream 365190 1800143 ~ 1808892 (+)
XLOC_031757 myl9b coding upstream 374521 1787160 ~ 1799561 (+)
XLOC_031764 CU638693.3 coding downstream 24081 2222764 ~ 2227343 (+)
XLOC_031765 CU638693.2 coding downstream 28949 2227632 ~ 2232544 (+)
XLOC_031766 CU638693.1 coding downstream 37210 2235893 ~ 2242684 (+)
XLOC_031767 pbx1b coding downstream 72876 2271559 ~ 2395013 (+)
XLOC_031768 CABZ01056637.1 coding downstream 258772 2457455 ~ 2464048 (+)
XLOC_031758 NA non-coding upstream 386038 1787674 ~ 1788044 (+)
XLOC_031755 NA non-coding upstream 638619 1528725 ~ 1535463 (+)
XLOC_031754 NA non-coding upstream 796182 1376631 ~ 1377900 (+)
XLOC_031769 LO017858.1 non-coding downstream 293050 2491733 ~ 2506452 (+)
XLOC_031770 LO018168.1 non-coding downstream 321290 2519973 ~ 2593500 (+)

Expression


Co-expression Network