XLOC_031823 (abcc4)


Basic Information

Item Value
gene id XLOC_031823
gene name abcc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7322587 ~ 7390458 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062336
GACATGTGCGTGTTAGAAAGTTATACAACAGTTTACAAGGTAAATGTCTTGCGCTGGTTACAGGTTATGCGAGGGGTACCAGAGTCCGGCTGAACCGCGGGGAGGATGACAAGCGATATGGAGCCGATAAAGAAAGATGCCAAAAGCAACCCCTCAGCCTCGGCTAATCTCTTCTCGCAGATATTTTTCTGCTGGCTGAATCCTCTTTTCAGTATCGGATCTAAGAGGAGACTTGAGGAGGATGACATGTTTAATGTGCTTCCGGAGGATCGGTCAAAGAAACTCGGGGAGGAGCTGCAGAGCTACTGGGACCAAGAGAAGGAGAAAGCAGCCAAAGAACTCAAGACCCCAAAACTCACGAAAGCCATTATCAGGTGCTACTGGAAATCTTATGCAGTTCTGGGAGTGTTTACTCTTATTGAGGAGTCAATAAAAGTGATCCAGCCTGTGTTTTTGGGCAAACTCATTAAGTATTTTGAGAACTATCGGCACGATGACATGGCAGCTTTATCTGAAGCTTATGGATATGCAACAGGCGTCTGTCTCTCCACCCTGGGCTTGGCTTTGCTCCATCATCTCTATTTCTACCACGTTCAAAGAGCTGGAATGAAAATTCGCATTGCAATGTGTCACATGATCTACAGGAAGGCTCTATGTCTTAGCGCTGCAGCAATGGGCCAAACAACCACAGGGCAGATCGTTAATCTTTTGTCCAATGACGTCAACAAATTCGATGAGTTGACTATTTTTCTGCACTTCCTGTGGGTGGGGCCTCTGCAAGCCGCagctgtgattggtctgctttGGCAAGAGATCGGACCATCGTGCCTTGCTGGGATGGCAGTTTTAGTCTTTCTAATGCCGCTTCAGACCATGTTCGGGAAACTGTTTTCCAAGTACAGGAGTAAAACCGCAGCCTTGACTGACAGCCGGATACGCACTATGAATGAGGTGGTTTCTGGCATACGTATAATTAAGATGTATGCCTGGGAGAAGCCGTTCGCCATGCTGGTTAATGATGTACGAAGGAAGGAGATCTCCAAAATCATGAGCAGCTCTTACCTGCGTGGCTTGAACATGGCCTCGTTCTTTACAGCCAATAAAATCATCCTGTTTGTGACGTTCACCGTGTACGTGTTGGTGGGAAACACCATGTCTGCGAGTCGCGTGTTTGTGGCCGTGTCTCTGTACAGCGCCGTCCGCCTCACCGTCACTCTGTTCTTCCCTGCTGCCATCGAGAAAGTGTCTGAATCCGCCATCAGCATCCGCAGGATCAAGAAGTTCCTGTTGCTGGATGAGCTTGTGAAAAATCACCTTCCGCTTTCTCAGGAGGAGAAGAAAGAGCCGTCGGTGGAGATGCAGGATCTCATATGCTACTGGGACAAGACTCTGGATGCTCCAACATTACAAAATGTGTGTTTTACTGTGAAGCCGGGTCAGCTGCTGGCTGTAATTGGTCCTGTGGGAGCTGGAAAGTCGTCTCTCCTCAGCACCGTTCTGGGAGAGCTTCCGGCTGAGAAGGGTGTGATAAAGGTGAAAGGAGAGCTGACCTACGCCTCCCAGCAGCCCTGGGTCTTTCCAGGCACCATTCGCAGCAACATACTGTTTGGAAAAGAGCTGCAGCCACAGCGATATGAGCGAGTCCTCCGAGCCTGTGCGCTTAAGAGGGACATGGAGCTGCTTCCTGATGGGGATTTGACAGTGATTGGAGACCGGGGAGCAACTCTCAGTGGAGGACAGAAAGCCAGAGTCAACCTGGCCAGgGCTGTGTATCAGGATGCTGATATTTACCTGCTGGATGATCCATTGAGTGCTGTGGATGCTGAAGTGAGCAGACATCTGTTTGAACAGTGTGTTTGTGGTATTCTGAAGGACAAGCCCAGGATCTTGGTGACCCATCAACTGCAGTACCTGAAGGCTGCGAATCAGATCCTGGTTTTGAAAGAGGGGCACATGGTGGCTCGAGGCTCGTACTCTGAGCTTCAGCAGTCCGGACTGGATTTCACCTCTCTTCTGAAGAAGGACGAAGAAGAGGAGAGCGGCAGTGAAAAAGGAGAAGCTCCTCGATCTCCACGCAGTCGCACCGTTTCCCAGAACTCCGTCCGTTCACATTCTTCCTCCGTTTTGTCGGTGAAAGACGACTCTGATCAGCTCCCGGCTGAACCTGTGCACACTATGGCCGAGGAGTTGCGCTCAGAGGGAAACATCGGCATCCGCATGTATTGGAAGTATTTTCGAGCCGGAGCAAACGTGGTGATGCTGGTTTTACTCTTGCTGCTCAATCTGCTGGCGCAGACTTTTTATATTCTTCAGGACTGGTGGCTTTCGTACTGGGCCACAGAGCAGGAGAAACTGGACCACAATACCAACAATACCAATACCAACAATACCAGTGCTGGAAACACGACTCAGCAACTTGACCTGAACTTCTATTTGGGCATCTATGCAGGTTTAACAGGAGCCACGATTGTCTTCGGCTTCATGCGTTGTCTAATTATGTTCAATGCTCTGGTGAGCTCAGCAGAGATGCTTCACAACCGCATGTTCAACAGCATCTTGAGGACACCAGTGCGCTTTTTCGACATCAATCCCATTGGAAGAATCCTCAACCGCTTCTCCAAGGACATCGGCCACCTTGACTCCTTACTTCCGTGGACATTTGTGGATTTCATCCAGGTGTTTCTGCAAATTGTCGGCGTGATTGCTGTTGCATCTTCTGTCATCCCTTGGATTCTGATCCCTGTTCTTCCCCTGTTGATTTGCTTCCTGTTCCTGCGCCGCTACTTCCTGCGGACATCTCGAGACGTCAAGCGCATCGAATCCACCACTCGAAGTCCTGTTTTCTCCCATCTGTCCTCCTCACTGCAAGGCCTGTGGACCATTCGTGCTTTTAAAGCGGAGGAAAGGTTTCAGCAAACATTTGATGCTCACCAGGATCTGCATTCAGAGGCCTGGTTCCTGTTCTTGACCACTTCACGCTGGTTTGCGGTGCGTTTGGATGGGATGTGCTCTGTGTTTGTGACTATCACAGCATTCGGATGTCTTCTTCTTAAAGACACTATGAATGCAGGAGATGTGGGCCTGGCATTGTCCTATGCTGTCACCCTGATGGGGATGTTCCAGTGGGGTGTAAGACAGAGTGCTGAGGTGGAGAACATGATGACGTCAGTGGAGAGAGTAGTAGAGTACACAGAGCTGGAAAGTGAAGCACCTTGGGAAACTCAAAAACGCCCCTCTCCCGACTGGCCAAATCGTGGCCTGATAACCTTCGACAGGGTCAACTTCTCCTACAGTTCTGACGGACCAGTTGTTCTCAAGAACATCTCAGCCATGTTCAGACCCAGAGAGAAGGTTGGAATAGTTGGACGGACTGGTGCAGGGAAAAGCTCCCTGATTTCAGCTTTGTTTCGTCTGTCAGAGCCAGAAGGAAAAATCCTGGTTGACGGAGTGTTGACCTCAGAGATCGGCCTCCACGACCTCCGTCAGAAGATGTCCATCATCCCGCAGGATCCTGTCCTGTTCACAGGAACCATGAGGAAGAACCTGGACCCCTTCAACCAGCACTCGGACCATGACTTGTGGAAAGCTCTGGAAGAGGTTCAGCTGAAGGCGGCTGTGGAGGAACTGCCTGGAAAATTGGAGACCGAACTGGCTGAGTCTGGATCAAACTTCAGCGTGGGTCAACGGCAGCTCGTCTGTCTGGCCAGAGCCATCCTGAGGAAGAATCGCGTTCTCATCATCGATGAAGCCACCGCAAATGTGGACCCTCGGACAGATGAGCTGATCCAGAAAACCATCCGTGATAAGTTTAAGGAATGCACAGTCCTCACCATCGCACACAGACTCAACACCATCATAGACAGCGACCGCATCCTGGTTCTAGATGCCGGTCGGATCCACGAATATGACGCTCCACACGTTCTACTACAGAACCAGAGCGGGATATTTTATAAGATGGTGCAGCAGACGGGAAAAGCAGAAGCGACGTCTCTGCTACAGACGGCCAAACAGGCATACGCAAACCGCAGTCCGGCCCACCAGCTCAATGGTTTTGCCACCACAGGAGATGGCAGTTTGATTATATTCGAGACTGCTTTATAATAGCCTGGAAGTGCCTGATGTAAACGGGGCACAGCTTCCCCAGAATCCTCCTCCTGCGCAGGACAACAGGCACAATTTCTTCACCAAAGAAAACCCGGCTGACAGAGCCAAAGACACGTGCATGAACGATCACGCCAGAGAGGACAGAGCTGCAGGGAGACTTCAACACCAGCATTTCTCCAGTTCAGTGGAGATTGTACACCA

Function

symbol description
abcc4 Enables efflux transmembrane transporter activity. Acts upstream of or within detoxification and regulation of cilium assembly. Located in plasma membrane. Is expressed in several structures, including Kupffer's vesicle; digestive system; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human ABCC4 (ATP binding cassette subfamily C member 4).

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0098754 detoxification biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0015562 efflux transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko04024 cAMP signaling pathway
ko04976 Bile secretion
ko01523 Antifolate resistance
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030616-511 Enables efflux transmembrane transporter activity. Acts upstream of or within detoxification and regulation of cilium assembly. Located in plasma membrane. Is expressed in several structures, including Kupffer's vesicle; digestive system; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human ABCC4 (ATP binding cassette subfamily C member 4).

Ensembl:

ensembl_id ENSDARG00000058953

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062336 True 4305 mRNA 0.50 30 7322587 7390458

Neighbor

gene id symbol gene type direction distance location
XLOC_031822 dzip1 coding upstream 42288 7249531 ~ 7280299 (+)
XLOC_031821 si:ch211-181l5.2 coding upstream 77371 7240403 ~ 7245216 (+)
XLOC_031820 NA coding upstream 113958 7207593 ~ 7208629 (+)
XLOC_031819 GPR161 coding upstream 189056 7123980 ~ 7133531 (+)
XLOC_031818 zak coding upstream 354999 6924637 ~ 6967588 (+)
XLOC_031824 sox21a coding downstream 23757 7414215 ~ 7415343 (+)
XLOC_031825 ccdc65 coding downstream 31440 7421898 ~ 7427512 (+)
XLOC_031826 AL953886.2 coding downstream 38853 7429311 ~ 7435700 (+)
XLOC_031827 arf3b coding downstream 54441 7444899 ~ 7452559 (+)
XLOC_031828 AL953886.1 coding downstream 62897 7453355 ~ 7453831 (+)
XLOC_031817 AL929341.1 non-coding upstream 442538 6879927 ~ 6880049 (+)
XLOC_031811 NA non-coding upstream 581179 6718916 ~ 6741408 (+)
XLOC_031807 BX324134.2 non-coding upstream 1106677 6215794 ~ 6215910 (+)
XLOC_031805 NA non-coding upstream 1236455 6085236 ~ 6086132 (+)
XLOC_031837 NA non-coding downstream 874306 8264764 ~ 8271403 (+)
XLOC_031839 NA non-coding downstream 948813 8339271 ~ 8346941 (+)
XLOC_031840 NA non-coding downstream 1059853 8450311 ~ 8453642 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_04952720_04980663 ABCC4 coding CI01000024 null 4952477 ~ 4980663 (-)