XLOC_003191 (nr2f6b)


Basic Information

Item Value
gene id XLOC_003191
gene name nr2f6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6115621 ~ 6134583 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006292
CCGctactcagagagagagagagagagagagagagagagagaacagagcGAAGCTTGTTGGCCAGTCACCACAGACGCTCGGGTCAGCTGTCTCTCCTGACCGCTGGATCTCATGATTTACTGATGAATGGAGAAAGGCAAGGGACGGGAAGCAGCAAATGGTTAAAAGAGCTTTGCTTTGGCTCCTAGGAATGCTGAGGCCCTGGAGACCATACAGCTGGACACACCGGCACTAACAAAACAAGaCTCTGACTTCTTCGGCTTACTGTCTGCAGCTTAAAGGGATTCGCTCCAGGGCGGCTCTGAATTCTCGACGCAGGAAGGTTTCTCGAGCAGCTCCTGCTGGTGTACACAGAGATGGCCATGGTGAGCGGGGGATGGGCCAACCCCAATGGCAGTGCTAATGGACTCGGTGAGAAAGGTTACCTGCGGGGGGAGGAGGAGGGAAGCTCGCCCCAGGCAGGGAACAGCGATGTGGAAGGTGGCGAGGAGGACAAGGCCTGCGTGGTGGACTGTGTTGTGTGTGGAGACAAATCCAGCGGGAAGCACTATGGTGTTTTCACCTGTGAAGGGTGCAAGAGTTTCTTCAAAAGGAGCATCAGACGGAACCTCAACTACACCTGCAGATCAAACAGAGAATGTCAGATTGATCAGCATCACCGTAACCAGTGTCAGTACTGCCGTCTGAAGAAGTGCTTCCGGGTCGGTATGAGGAAAGAAGctgttCAGCGTGGCCGAATTCCTCCATCCCACGCAGGCATCAGCCCAGCCTCCATGGTAGGAGCAGGTGGTGATGTTGGAGGAGGTCCGGGCATGGGTGCTGATTTTTTTAATGGTCAGCCAGTGTCTGAACTCATCTCTCAACTACTGAGAGCAGAGCCGTACCCCAACAGCCGTTATGGAGCCCAGTGTGGCCAGCAGCTCCAAGGCGCCAACAGCTCCATGATGGGCATTGACAATATATGTGAGCTTGCAGCCCGGCTGCT
>TCONS_00006293
cGAAGCTTGTTGGCCAGTCACCACAGACGCTCGGGTCAGCTGTCTCTCCTGACCGCTGGATCTCATGATTTACTGATGAATGGAGAAAGGCAAGGGACGGGAAGCAGCAAATGGTTAAAAGAGCTTTGCTTTGGCTCCTAGGAATGCTGAGGCCCTGGAGACCATACAGCTGGACACACCGGCACTAACAAAACAAGCTTAAAGGGATTCGCTCCAGGGCGGCTCTGAATTCTCGACGCAGGAAGGTTTCTCGAGCAGCTCCTGCTGGTGTACACAGAGATGGCCATGGTGAGCGGGGGATGGGCCAACCCCAATGGCAGTGCTAATGGACTCGGTGAGAAAGGTTACCTGCGGGGGGAGGAGGAGGGAAGCTCGCCCCAGGCAGGGAACAGCGATGTGGAAGGTGGCGAGGAGGACAAGGCCTGCGTGGTGGACTGTGTTGTGTGTGGAGACAAATCCAGCGGGAAGCACTATGGTGTTTTCACCTGTGAAGGGTGCAAGAGTTTCTTCAAAAGGAGCATCAGACGGAACCTCAACTACACCTGCAGATCAAACAGAGAATGTCAGATTGATCAGCATCACCGTAACCAGTGTCAGTACTGCCGTCTGAAGAAGTGCTTCCGGGTCGGTATGAGGAAAGAAGctgttCAGCGTGGCCGAATTCCTCCATCCCACGCAGGCATCAGCCCAGCCTCCATGGTAGGAGCAGGTGGTGATGTTGGAGGAGGTCCGGGCATGGGTGCTGATTTTTTTAATGGTCAGCCAGTGTCTGAACTCATCTCTCAACTACTGAGAGCAGAGCCGTACCCCAACAGCCGTTATGGAGCCCAGTGTGGCCAGCAGCTCCAAGGCGCCAACAGCTCCATGATGGGCATTGACAATATATGTGAGCTTGCAGCCCGGCTGCTGTTCAGCACTATTGAGTGGGCCAGGAATATTCCCTATTTTCCTGACCTGCCAGTGTCAGAGCAGGTGGCCCTTCTGAGGCTCAGCTGGAGTGAACTGTTTATCCTGAATGCAGCTCAGTCGGCGCTGCCCCTGCACACGGCCCCTCTGCTGGCAGCTGCAGGGTTTCACTCCTCCCCTATGCCCGCTGATCGCGTCGTGTCCTTCATGGACCAGGTGCGGGTCTTTCAGGACCAGGTGGACAAGCTGACACGACTGCAGGTGGATTCTGTTGAAtacagctgtctgaaagccatcGCTCTGTTCTCACCAGATGCATGCGGGCTGTCGGATCCAGCGCACGTCGAGAGCTTGCAGGAGAAAGCACAGGTGGCCCTGACCGAATACGAGCGGATGCAGTATCCAGGCCAGCCCCAGCGGTTCGGCCGGCTCCTGCTGCGACTTCCCGCTCTGAGAGCCGTTCCCGCCAACCTCATCTCTCAACTCTTCTTCATGCGGCTGGTTGGCAAGACGCCAATCGAAACTCTAATCCGGGACATGCAGCTCTCTGGAAGCTCCATCAGCTGGCCGTATGTGCCTGGACAGTAGACGAACAATCAGAGGACTTGTTCCTATGTCCCATCTCAGGCTGCTCCCATGATTCCACAGTAACTGTGCAGATAGATGTCGTGTGTGGGTTTTGTcgatggtgtatatatatatatatgactaaaGGTGGATGACGCATATGTTCCTATGCAGTTTAATTGAGCCATCCAGTACCAGGATACCTCATGTTTTCTGTCATGAGCATCAACAAATTCTCTCAAAAAACATTTGACAAGATGAATGATAAACAAAGGACTGACTATGAAGTATTTGATCCCAAGCTTTAAAAGGATAACCTTCTTTTTGAGAGCATAGCGAACTACTTTAAAGCTAGTGTAGATTAAGTGTACTTTAAGAATCTTTATAACAGACAGCATTTGTGAGTCAAAAATGTTGGGAAATATACTTGAAAAATCAGTGAATGGCTATATTTGGAATGGGATACTAGCATACTCCACACTACTGTATACTGCTTTATATTAAAAATGGTCAAAACGTACGAAATATGCAACATTTCATGTATCAAACAGTACTATGCTACACTGCTGTCACGTGACCTCATGATATTGCATGTTTATGCTGCGCTACATTTAGGATACAGTAATCTGTGCAGTGCTGCTCAGGTTATGTTTAGCATATTTTGGCAAATGGTCATCCAGGTATTATACAGATACATACTATGCACAGTGAACATACTATATAATGCAGAGATATTAAGAGTAGTATGTTAGTATGCTGTTCTGAACATAGTCAGTGTCCTCGATTGTCCTATTTAAACAGGTTTTGTGAATTTTTCATTGGGGTGAGGACATGGTTGAGAGTTTTACATTGCCGACAGTGGGAAGTATTAAgtatttttgcattataaaaataaaaagaataaaacaa
>TCONS_00006294
GTTGGCCAGTCACCACAGACGCTCGGGTCAGCTGTCTCTCCTGACCGCTGGATCTCATGATTTACTGATGAATGGAGAAAGGCAAGGGACGGGAAGCAGCAAATGGTTAAAAGAGCTTTGCTTTGGCTCCTAGGAATGCTGAGGCCCTGGAGACCATACAGCTGGACACACCGGCACTAACAAAACAAGGGCGAGGTAAGCTGTCCAACTCTCAGCTGCTCATTGATTCAAAGCAATCTTGGGATCTTCAGAGACTTTTTTGTGGTTAGAGGACAAGAAGAAAAGCACCGGGATGAGTGTTCCCCTGACAGGATTTTGATATGACATTTGGCGGCAAAAACATGTCAGCCTGCTTAAAGGGATTCGCTCCAGGGCGGCTCTGAATTCTCGACGCAGGAAGGTTTCTCGAGCAGCTCCTGCTGGTGTACACAGAGATGGCCATGGTGAGCGGGGGATGGGCCAACCCCAATGGCAGTGCTAATGGACTCGGTGAGAAAGGTTACCTGCGGGGGGAGGAGGAGGGAAGCTCGCCCCAGGCAGGGAACAGCGATGTGGAAGGTGGCGAGGAGGACAAGGCCTGCGTGGTGGACTGTGTTGTGTGTG
>TCONS_00006295
GGCTTTCTTCCGTTTGGAAATCAACTCTTCACATGCAGTGTAAATAAAGCAGCTTCCTTTGGATTATATGAAGCTTAAAGGGATTCGCTCCAGGGCGGCTCTGAATTCTCGACGCAGGAAGGTTTCTCGAGCAGCTCCTGCTGGTGTACACAGAGATGGCCATGGTGAGCGGGGGATGGGCCAACCCCAATGGCAGTGCTAATGGACTCGGTGAGAAAGGTTACCTGCGGGGGGAGGAGGAGGGAAGCTCGCCCCAGGCAGGGAACAGCGATGTGGAAGGTGGCGAGGAGGACAAGGCCTGCGTGGTGGACTGTGTTGTGTGTGGAGACAAATCCAGCGGGAAGCACTATGGTGTTTTCACCTGTGAAGGGTGCAAGAGTTTCTTCAAAAGGAGCATCAGACGGAACCTCAACTACACCTGCAGATCAAACAGAGAATGTCAGATTGATCAGCATCACCGTAACCAG
>TCONS_00006296
GGAGGCTTAATCTAAACTCTCCGTTTGATCTCTGTTTGATTTCACTGCTGTCCCTGAGAAGCAACGGAGACACCAAGAGATCTAATGTGATTTTTAGGTTAATAAAACCTGAGACTGAGTGATTCAAACCATCACAATTTGACCTGTAATACCATCAGCATTTCTAAACAGGACTGCATGGTTGTTAGTACGAAAAGAACTGGTTTAACTTGTTGGTTACTAGGGGGCATGTCGAGTAGGTTTTCCCAGTGTAATGACACAGCTGAGAAAGAGTTTCATTTCATCCCAGTCTCTGAGCTGTGCAGCATGTGGATGAGCTCGTCTTTTCCCCTGAAGTCTGGGTGCGTTTATCTGTAATTTATTGTTTCCTGTGAAAAGGGCGAGGTAAGCTGTCCAACTCTCAGCTGCTCATTGATTCAAAGCAATCTTGGGATCTTCAGAGACTTTTTTGTGGTTAGAGGACAAGAAGAAAAGCACCGGGATGAGTGTTCCCCTGACAGGATTTTGATATGACATTTGGCGGCAAAAACATGTCAGCCTGCTTAAAGGGATTCGCTCCAGGGCGGCTCTGAATTCTCGACGCAGGAAGGTTTCTCGAGCAGCTCCTGCTGGTGTACACAGAGATGGCCATGGTGAGCGGGGGATGGGCCAACCCCAATGGCAGTGCTAATGGACTCGGTGAGAAAGGTTACCTGCGGGGGGAGGAGGAGGGAAGCTCGCCCCAGGCAGGGAACAGCGATGTGGAAGGTGGCGAGGAGGACAAGGCCTGCGTGGTGGACTGTGTTGTGTGTGGAGACAAATCCAGCGGGAAGCACTATGGTGTTTTCACCTGTGAAGGGTGCAAGAGTTTCTTCAAAAGGAGCATCAGACGGAACCTCAACTACACCTGCAGATCAAACAGAGAATGTCAGATTGATCAGCATCACCGTAACCAGTGTCAGTACTGCCGTCTGAAGAAGTGCTTCCGGGTCGGTATGAGGAAAGAAGctgttCAGCGTGGCCGAATTCCTCCATCCCACGCAGGCATCAGCCCAGCCTCCATGGTAGGAGCAGGTGGTGATGTTGGAGGAGGTCCGGGCATGGGTGCTGATTTTTTTAATGGTCAGCCAGTGTCTGAACTCATCTCTCAACTACTGAGAGCAGAGCCGTACCCCAACAGCCGTTATGGAGCCCAGTGTGGCCAGCAGCTCCAAGGCGCCAACAGCTCCATGATGGGCATTGACAATATATGTGAGCTTGCAGCCCGGCTGCTGTTCAGCACTATTGAGTGGGCCAGGAATATTCCCTATTTTCCTGACCTGCCAGTGTCAGAGCAGGTGGCCCTTCTGAGGCTCAGCTGGAGTGAACTGTTTATCCTGAATGCAGCTCAGTCGGCGCTGCCCCTGCACACGGCCCCTCTGCTGGCAGCTGCAGGGTTTCACTCCTCCCCTATGCCCGCTGATCGCGTCGTGTCCTTCATGGACCAGGTGCGGGTCTTTCAGGACCAGGTGGACAAGCTGACACGACTGCAGGTGGATTCTGTTGAAtacagctgtctgaaagccatcGCTCTGTTCTCACCAGATGCATGCGGGCTGTCGGATCCAGCGCACGTCGAGAGCTTGCAGGAGAAAGCACAGGTGGCCCTGACCGAATACGAGCGGATGCAGTATCCAGGCCAGCCCCAGCGGTTCGGCCGGCTCCTGCTGCGACTTCCCGCTCTGAGAGCCGTTCCCGCCAACCTCATCTCTCAACTCTTCTTCATGCGGCTGGTTGGCAAGACGCCAATCGAAACTCTAATCCGGGACATGCAGCTCTCTGGAAGCTCCATCAGCTGGCCGTATGTGCCTGGACAGTAGACGAACAATCAGAGGACTTGTTCCTATGTCCCATCTCAGGCTGCTCCCATGATTCCACAGTAACTGTGCAGATAGATGTCGTGTGTGGGTTTTGTcgatggtgtatatatatatatatgactaaaGGTGGATGACGCATATGTTCCTATGCAGTTTAATTGAGCCATCCAGTACCAGGATACCTCATGTTTTCTGTCATGAGCATCAACAAATTCTCTCAAAAAACATTTGACAAGATGAATGATAAACAAAGGACTGACTATGAAGTATTTGATCCCAAGCTTTAAAAGGATAACCTTCTTTTTGAGAGCATAGCGAACTACTTTAAAGCTAGTGTAGATTAAGTGTACTTTAAGAATCTTTATAACAGACAGCATTTGTGAGTCAAAAATGTTGGGAAATATACTTGAAAAATCAGTGAATGGCTATATTTGGAATGGGATACTAGCATACTCCACACTACTGTATACTGCTTTATATTAAAAATGGTCAAAACGTACGAAATATGCAACATTTCATGTATCAAACAGTACTATGCTACACTGCTGTCACGTGACCTCATGATATTGCATGTTTATGCTGCGCTACATTTAGGATACAGTAATCTGTGCAGTGCTGCTCAGGTTATGTTTAGCATATTTTGGCAAATGGTCATCCAGGTATTATACAGATACATACTATGCACAGTGAACATACTATATAATGCAGAGATATTAAGAGTAGTATGTTAGTATGCTGTTCTGAACATAGTCAGTGTCCTCGATTGTCCTATTTAAACAGGTTTTGTGAATTTTTCATTGGGGTGAGGACATGGTTGAGAGTTTTACATTGCCGACAGTGGGAAGTATTAAgtatttttgcattataaaaataaaaagaataaaacaagcTCTTATGTAAGAAGAATGTTTATGACGAACATGCATTTTCAGTAGTGTATTACATGTCTAATAAACAAACTGCCAACAGGAGAAAAGGACATTTGGTCAAACTTGTTTGTCTgaattctagatttttttttataatgactgaatttttttgggggggtcaAATTCATCAGAATAGAACGTGCTTGTGGAAAATGTAGAGAAAAAttacatgctttaaaaaaatacttgtaaTTAAaatagggcgacatggtggctcagtggttagcactgttgccttaaagcaaaaaggtcgctggtttgagttccatctgggtcagttggcatttgggtgtggagtttgcatgttctccccctgttggcgtgggtttcctcctggtactccggtttcccccacagtccaaagacatgcgctataggacaacggaataaactaaactggccatagtgtatgtgtgtgaatgagtgtgtatggatgattcctagtactgagttgcagctggaagtgcatccgctgtgtgaaacatatgctaataattaatcataataattccttacatttttataGAGCTTTTCTAGagactcaaagcgctttacacaatgggaggAATCTCCACATCCACCACCAGGATTCATCTGGATGACGTGAtgacagccatattgcgccagaccgcacaccaggtgattggtggagaggagacggagttatgaagccaattatgatatggggatggttagaggCCATGATGGGCAGAGGCCAGTGGCCAAATTTTGCCAGGATGGCGGGgttaaacctctactctttttcgaaagacatcctgggatttttaatgaccacagagagtcaggacctcgatttaaggTCTCATCCAAAAGaaggtgctcactgagcagtatagagacccatcaatatactggggcgttagaacTCACACACAGTGAGTTTCCATAGAAACCTTCTGACATTGCCAGAACTTCATCAAAggacatgtcaaaccaacgat

Function

symbol description
nr2f6b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; axis; gut; mesoderm; and nervous system. Orthologous to human NR2F6 (nuclear receptor subfamily 2 group F member 6).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2351 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; axis; gut; mesoderm; and nervous system. Orthologous to human NR2F6 (nuclear receptor subfamily 2 group F member 6).

Ensembl:

ensembl_id ENSDARG00000003165

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006292 False 986 mRNA 0.55 4 6115621 6124508
TCONS_00006293 False 2382 mRNA 0.49 5 6115669 6133580
TCONS_00006294 False 603 mRNA 0.54 3 6115677 6117377
TCONS_00006295 False 467 mRNA 0.53 3 6116096 6124042
TCONS_00006296 True 3729 mRNA 0.46 5 6116503 6134583

Neighbor

gene id symbol gene type direction distance location
XLOC_003190 ushbp1 coding upstream 14517 6076646 ~ 6101104 (+)
XLOC_003189 CT573239.2 coding upstream 40838 6069875 ~ 6074783 (+)
XLOC_003188 gtpbp3 coding upstream 77862 6009984 ~ 6037759 (+)
XLOC_003187 NA coding upstream 149232 5955265 ~ 5966389 (+)
XLOC_003186 rps15 coding upstream 183999 5926850 ~ 5931622 (+)
XLOC_003192 tax1bp3 coding downstream 1637 6136220 ~ 6145158 (+)
XLOC_003193 slc1a6 coding downstream 18060 6152643 ~ 6175057 (+)
XLOC_003194 BX248501.2 coding downstream 34729 6169312 ~ 6205367 (+)
XLOC_003195 BX248501.1 coding downstream 71386 6205969 ~ 6224120 (+)
XLOC_003196 ctns coding downstream 147064 6281647 ~ 6293709 (+)
XLOC_003250 BX324177.11 misc downstream 5211220 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5238303 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5251779 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5283450 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5294810 11429393 ~ 11429689 (+)
XLOC_003180 NA non-coding upstream 512900 5602340 ~ 5602721 (+)
XLOC_003178 CU855733.1 non-coding upstream 584045 5531443 ~ 5531576 (+)
XLOC_003176 CR559931.1 non-coding upstream 633737 5481753 ~ 5481884 (+)
XLOC_003198 AL840638.1 non-coding downstream 188415 6322998 ~ 6324302 (+)
XLOC_003199 AL840638.2 non-coding downstream 193395 6327978 ~ 6328093 (+)
XLOC_003203 CU062501.1 non-coding downstream 308874 6443457 ~ 6444163 (+)
XLOC_003205 NA non-coding downstream 326041 6460624 ~ 6513018 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_03999611_04005699 NR2F6, NR2F6A, NR2F6B coding CI01000057 null 3999611 ~ 4007102 (+)
bowfin (Amia calva) AMCG00006040 nr2f6,LOC108238456,LOC103359430,LOC101171737 coding CM030142.1 CM030142.1 14838689 ~ 14848138 (+)