LOC110491682 (rpl19)


Basic Information

Item Value
gene id LOC110491682
gene name rpl19
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24085708 ~ 24103303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946574.1
CCACTCTGAATCAGTTTGTTTTTATTGTATTGTAAAACTAGCAAATACATCAGGCATGCTCAGGCTTCAGAAGCGATTGGCGTCCAGCGTCTTGCGCTGTGGCAAGAAGAAGGTATGGCTGGACCCCAATGAAACCAATGAGATTGCCAACGCTAACTCCCGCCAGCAGATTCGCAAGCTGGTGAAGGATGGTCTGATCATCAGGAAGCCTGTGACGGTGCATTCCCGTGCCCGCTGCCGCAAGAACACGCTGGCACGCCGCAAGGGACGCCACACGGGCATAGGTAAGAGGAAGGGTACAGCCAACGCCCGTATGCCAGAGAAGCTCTCGTGGATGCGACGCATGAGGATCCTGCGGCGCCTACTGCGGCGTTACAGGGAGTCCAAGAAAATCGACAGGCACATGTACCACAGTCTCTACTTGAAGGTGAAGGGTAACGTCTTCAAGAACAAGCGCATCCTAATGGAACACATTCACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTCCTGTCTGACCAGGCCGAGGCTCGTCGCTCGAAGACCAAGGAGGCCCGCAAGCGCAGAGAAGAGCGCATAGCGGCCAAGAAGGAAGAGTTCATCAAGACTTTGTCAAAGGAGGAGGAGACGACCAAGAAATGAGTCGCCCATCCACCCCCCTTCTCCCttttcaatgtttttttaaattttttaaatggACCCAAAACAGTCAAGGTTCAGTCTCCGTCTGTGACGTTATACTATGTGCTGAAGTTTTTTGCTATTGCCACCAATACCAATTGAAAAAATACCACAACTtgttcagtgccttcagaaagtattctcacAACCCTTTACTTTTCCCACCTTTTGTTGTCTTACAGGTTGaattaaataaacatttattaCATTGA
>XM_036946573.1
CATTGAACTAATCACATGATAGCTAGCATGCTCAGGCTTCAGAAGCGATTGGCGTCCAGCGTCTTGCGCTGTGGCAAGAAGAAGGTATGGCTGGACCCCAATGAAACCAATGAGATTGCCAACGCTAACTCCCGCCAGCAGATTCGCAAGCTGGTGAAGGATGGTCTGATCATCAGGAAGCCTGTGACGGTGCATTCCCGTGCCCGCTGCCGCAAGAACACGCTGGCACGCCGCAAGGGACGCCACACGGGCATAGGTAAGAGGAAGGGTACAGCCAACGCCCGTATGCCAGAGAAGCTCTCGTGGATGCGACGCATGAGGATCCTGCGGCGCCTACTGCGGCGTTACAGGGAGTCCAAGAAAATCGACAGGCACATGTACCACAGTCTCTACTTGAAGGTGAAGGGTAACGTCTTCAAGAACAAGCGCATCCTAATGGAACACATTCACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTCCTGTCTGACCAGGCCGAGGCTCGTCGCTCGAAGACCAAGGAGGCCCGCAAGCGCAGAGAAGAGCGCATAGCGGCCAAGAAGGAAGAGTTCATCAAGACTTTGTCAAAGGAGGAGGAGACGACCAAGAAATGAGTCGCCCATCCACCCCCCTTCTCCCttttcaatgtttttttaaattttttaaatggACCCAAAACAGTCAAGGTTCAGTCTCCGTCTGTGACGTTATACTATGTGCTGAAGTTTTTTGCTATTGCCACCAATACCAATTGAAAAAATACCACAACTtgttcagtgccttcagaaagtattctcacAACCCTTTACTTTTCCCACCTTTTGTTGTCTTACAGGTTGaattaaataaacatttattaCATTGA
>XM_021565309.2
ATCTTATCTCCGTTATAATGGTAGGGACCCCATACTTCACACGTCATTCCTTTCTCTCTAAGAGTCGCAGTCATGAGCATGCTCAGGCTTCAGAAGCGATTGGCGTCCAGCGTCTTGCGCTGTGGCAAGAAGAAGGTATGGCTGGACCCCAATGAAACCAATGAGATTGCCAACGCTAACTCCCGCCAGCAGATTCGCAAGCTGGTGAAGGATGGTCTGATCATCAGGAAGCCTGTGACGGTGCATTCCCGTGCCCGCTGCCGCAAGAACACGCTGGCACGCCGCAAGGGACGCCACACGGGCATAGGTAAGAGGAAGGGTACAGCCAACGCCCGTATGCCAGAGAAGCTCTCGTGGATGCGACGCATGAGGATCCTGCGGCGCCTACTGCGGCGTTACAGGGAGTCCAAGAAAATCGACAGGCACATGTACCACAGTCTCTACTTGAAGGTGAAGGGTAACGTCTTCAAGAACAAGCGCATCCTAATGGAACACATTCACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTCCTGTCTGACCAGGCCGAGGCTCGTCGCTCGAAGACCAAGGAGGCCCGCAAGCGCAGAGAAGAGCGCATAGCGGCCAAGAAGGAAGAGTTCATCAAGACTTTGTCAAAGGAGGAGGAGACGACCAAGAAATGAGTCGCCCATCCACCCCCCTTCTCCCttttcaatgtttttttaaattttttaaatggACCCAAAACAGTCAAGGTTCAGTCTCCGTCTGTGACGTTATACTATGTGCTGAAGTTTTTTGCTATTGCCACCAATACCAATTGAAAAAATACCACAACTtgttcagtgccttcagaaagtattctcacAACCCTTTACTTTTCCCACCTTTTGTTGTCTTACAGGTTGaattaaataaacatttattaCATTGA
>XM_021565311.2
aaatccccgagctgacaagCATGCTCAGGCTTCAGAAGCGATTGGCGTCCAGCGTCTTGCGCTGTGGCAAGAAGAAGGTATGGCTGGACCCCAATGAAACCAATGAGATTGCCAACGCTAACTCCCGCCAGCAGATTCGCAAGCTGGTGAAGGATGGTCTGATCATCAGGAAGCCTGTGACGGTGCATTCCCGTGCCCGCTGCCGCAAGAACACGCTGGCACGCCGCAAGGGACGCCACACGGGCATAGGTAAGAGGAAGGGTACAGCCAACGCCCGTATGCCAGAGAAGCTCTCGTGGATGCGACGCATGAGGATCCTGCGGCGCCTACTGCGGCGTTACAGGGAGTCCAAGAAAATCGACAGGCACATGTACCACAGTCTCTACTTGAAGGTGAAGGGTAACGTCTTCAAGAACAAGCGCATCCTAATGGAACACATTCACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTCCTGTCTGACCAGGCCGAGGCTCGTCGCTCGAAGACCAAGGAGGCCCGCAAGCGCAGAGAAGAGCGCATAGCGGCCAAGAAGGAAGAGTTCATCAAGACTTTGTCAAAGGAGGAGGAGACGACCAAGAAATGAGTCGCCCATCCACCCCCCTTCTCCCttttcaatgtttttttaaattttttaaatggACCCAAAACAGTCAAGGTTCAGTCTCCGTCTGTGACGTTATACTATGTGCTGAAGTTTTTTGCTATTGCCACCAATACCAATTGAAAAAATACCACAACTtgttcagtgccttcagaaagtattctcacAACCCTTTACTTTTCCCACCTTTTGTTGTCTTACAGGTTGaattaaataaacatttattaCATTGA

Function

symbol description
rpl19 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within hemopoiesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL19 (ribosomal protein L19).

NR:

description
60S ribosomal protein L19

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02885 RP-L19e, RPL19; large subunit ribosomal protein L19e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946574.1 False 894 mRNA 0.49 6 24085708 24088617
XM_036946573.1 False 866 mRNA 0.50 6 24085708 24089487
XM_021565309.2 False 917 mRNA 0.50 6 24085708 24089660
XM_021565311.2 True 859 mRNA 0.50 6 24085708 24103303

Neighbor

gene id symbol gene type direction distance location
LOC110492858 LOC106579369 coding downstream 75600 23995179 ~ 24034410 (-)
LOC110491678 LOC106579370 coding downstream 196089 23856243 ~ 23889619 (-)
LOC110491677 pnmt coding downstream 253250 23827897 ~ 23832458 (-)
LOC110491676 LOC106579149 coding downstream 260820 23782451 ~ 23824888 (-)
LOC110491674 LOC106579150 coding downstream 318821 23727468 ~ 23766887 (-)
LOC110491687 LOC106579141 coding upstream 197975 24301278 ~ 24334350 (-)
LOC110491688 NA coding upstream 236998 24340301 ~ 24351205 (-)
LOC110491691 ptrf coding upstream 425676 24528979 ~ 24552503 (-)
LOC110491696 crp coding upstream 508244 24611547 ~ 24613120 (-)
LOC110491700 LOC106579130 coding upstream 601554 24704857 ~ 24725950 (-)
G1354906 NA non-coding downstream 881 24084481 ~ 24084827 (-)
G1354904 NA non-coding downstream 2292 24083208 ~ 24083416 (-)
G1354897 NA non-coding downstream 9865 24075617 ~ 24075843 (-)
G1354893 NA non-coding downstream 15585 24069867 ~ 24070123 (-)
G1354883 NA non-coding downstream 28510 24056991 ~ 24057198 (-)
G1354952 NA non-coding upstream 63127 24166430 ~ 24168731 (-)
G1354949 NA non-coding upstream 98677 24201980 ~ 24204658 (-)
G1355005 NA non-coding upstream 133321 24236624 ~ 24237039 (-)
G1355009 NA non-coding upstream 136553 24239856 ~ 24240069 (-)
G1355012 NA non-coding upstream 139221 24242524 ~ 24243164 (-)
G1354433 LOC106581475 other downstream 627161 23451825 ~ 23458547 (-)
G1354351 NA other downstream 766316 23318569 ~ 23319392 (-)
G1353762 NA other downstream 1040947 23043249 ~ 23044761 (-)
G1353300 NA other downstream 1443606 22641414 ~ 22642102 (-)
LOC110491708 LOC106561205 other upstream 781563 24884866 ~ 24889077 (-)
G1357833 NA other upstream 2623992 26727295 ~ 26727828 (-)
LOC110491745 LOC106609103 other upstream 2626001 26729304 ~ 26744821 (-)
G1359119 NA other upstream 3008480 27111783 ~ 27113401 (-)
G1359321 NA other upstream 3253981 27357284 ~ 27359562 (-)

Expression


Co-expression Network