G1354949


Basic Information

Item Value
gene id G1354949
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24201980 ~ 24204658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1548843
TTATTTTAAAAATTATTACATTCACACACAAAATTGTCACTCAAACTTGATTTAAAATTATTTATAAAACTTTTATTTCCGGCTCCTCCCCCCCCTGCCCAACTTCAATGTAGGGCCCAGAATTTTTCCTGGTCTTGTTACATGGGGAAAACTCAGGGCACTATACTATATTTTTAAGCAAAACACAGGAAGATAAAAACACAGGACAGTTTAAAATCTATTtcacaaagcaggatcaatgttCATCAACTGAACTTGAAGGTATATCTTGTTTGTGGAGTATTCAAAATTAATGTGCTGGAGTTTTTCATTTTATACTGTATACAGTTTATTCCATGCACCTGGAAATACTCTATGGCCCGGTTTCCCAGAAACAGATTAAGCATCGACTTAAAAATAATGCTTCTCCATTGAAAGCATTTAATCTCTGGTTGCACAAATATCTTTTTCTCTTCAAAAAGGTATGGTATAACGGCAATGATTTTCAAGAACCCATAGTGAAATTTACCTTATCAAGAAAACAGTTATTTCTCTGTTAATCAAAGTTAGCTTTCTGATTTCTTGGTTCTGCTTTGTGTAATACAACCCAGATATTCAAGACTAAAACCCACACAGTTAAGAAATACAGGTGAATTACAAATAAAAAGGACAATTTGTACAGTACTTTCCCATATACGTCTGGACTTGAACAAGAAAAAAACAAAATGCTGAGAAAATAGACTCAAGCAAAGCAACAAAACAAATGGTCTCGTGAGTGGAAAAGCTCATATCCACTCTGCCCATTTGACATTTGTTAGTAAACTTTAATTCACATACAAATTTGCATGCCACATATTGGTAGTAAAATAGCATTATGGTGGTAAAAATAGCACAAGAAAATAACTAGCTCTGAATACATGCAGTAAATTTAGACAGGTAGGCACTATTTCATCTCTTCCTAAGGTGTGGTCACCTCGAATTCTCTGGGATGAACCCTACATCAAAGTACATTTTCCTGAGACTAGCAACATAATTCACTACTATGATCAATGGGGAGGGTAAATAAGGGGTTAAACCTGGGCTACGTTCAGTAGGCAAACCTGGTATGTCACAGACAGAAATGTCAGAGTTCACGTGATtaattattataaactgggtggttcgagccctgaatgctgatagcagacagccgtggtatattagaccgtataccacgggtatggaAAAAACATTTTTAGTTCTCTAAtcacattggtaaccagtttataaaagcaataaggcacctcaggggtttgtggtatatggccaatatgccaaggctaagggctgtatccaggcactctgcattgcgTCGTACACAAGAATAGcacttagctgtggtatattggcaataccCCCCCCCGGGCCTTATTGCGTAATTCTACCATGTCAGAGAGGCTTGGGTGTTCTTCATAACATAGTggtttgcaaaagtattcacctcccttggcatttttcatatGTTTTGCCTTagaacctggaattaaaatagatttttgggcggtttgtatcatttgatttacacaacatgcctaccaccttGAAAAAGACAACTATTCACCCcccagtcaatactttgtagagccaccttttgtagCAACTACAGCTGGAAGTCTCTTCTGGTAtcaataagcttggcacatctagccactgggatttttgcccaatTTTCTAGGCAGAACTGCCTGACTAGGCCAttcaaagacatttaaatgtttccccttaaaccacttgagtgttgctttagcgtATGCTCAGggtcctgctggaaggtggagatctgtcccagtctcaaatctctggaagacaaacaggtttctcaagaatttccctgtatttagcgccatccattatTCCTTCAAttatgaccagtttcccagtccctgccggtgaaaaacatccccacagcatgatgctgcaaccaccatgcttcactgtggggatggtgttctcggggtgatgacgggtgttgggtttgcgccagacagcatttttcttgatggccaaaaagctcaattttagccTCATCTGACCAgggtaccttcttccatatgtttggggagtcgccttttggcgaacatcaaacatgtttgcttatatttctggccactctcccgtaaagcccagctctgtggagtgtacggcttaaagtggtcctatggacagatactccaatctccgttgtgtagctttgcagctccttcaggattatctttgtgctctttgttgcctctctgattaatgccctctttgcctggtctgtgagttttggtgggtggaccgctctggcaggtttgttgtagtgccatattcttttcatattttaataatggatttaatggtgctccgtgtgATGTTCAaggttataaaaaaaaatctaactgaaccctgatctgtacttccaAACAGGTCAAGAACAAAGTTGTGATTGAGgttttcatggtgccgcttgcttgctggtgccccttgcttagtggtgttgtagactctggggcctttcagaacagatatatatatatatataccgagATCACGTGACACTTaattaaagtccacctgtgtgcaatctatgtgacttctgaaggtaattggttgcatcagattttatttaggggcttcatagcaaatataaatt
>TU1548846
CCCCCTGCCCAACTTCAATGTAGGGCCCAGAATTTTTCCTGGTCTTGTTACATGGGGAAAACTCAGGGCACTATACTATATTTTTAAGCAAAACACAGGAAGATAAAAACACAGGACAGTTTAAAATCTATTtcacaaagcaggatcaatgttCATCAACTGAACTTGAAGGTATATCTTGTTTGTGGAGTATTCAAAATTAATGTGCTGGAGTTTTTCATTTTATACTGTATACAGTTTATTCCATGCACCTGGAAATACTCTATGGCCCGGTTTCCCAGAAACAGATTAAGCATCGACTTAAAAATAATGCTTCTCCATTGAAAGCATTTAATCTCTGGTTGCACAAATATCTTTTTCTCTTCAAAAAGGTATGGTATAACGGCAATGATTTTCAAGAACCCATAGTGAAATTTACCTTATCAAGAAAACAGTTATTTCTCTGTTAATCAAAGTTAGCTTTCTGATTTCTTGGTTCTGCTTTGTGTAATACAACCCAGATATTCAAGACTAAAACCCACACAGTTAAGAAATACAGGTGAATTACAAATAAAAAGGACAATTTGTACAGTACTTTCCCATATACGTCTGGACTTGAACAAGAAAAAAACAAAATGCTGAGAAAATAGACTCAAGCAAAGCAACAAAACAAATGGTCTCGTGAGTGGAAAAGCTCATATCCACTCTGCCCATTTGACATTTGTTAGTAAACTTTAATTCACATACAAATTTGCATGCCACATATTGGTAGTAAAATAGCATTATGGTGGTAAAAATAGCACAAGAAAATAACTAGCTCTGAATACATGCAGTAAATTTAGACAGGTAGGCACTATTTCATCTCTTCCTAAGGTGTGGTCACCTCGAATTCTCTGGGATGAACCCTACATCAAAGTACATTTTCCTGAGACTAGCAACATAATTCACTACTATGATCAATGGGGAGGGTAAATAAGGGGTTAAACCTGGGCTACGTTCAGTAGGCAAACCTGGTATGTCACAGACAGAAATGTCAGAGTTCACGTGATtaattattataaactgggtggttcgagccctgaatgctgatagcagacagccgtggtatattagaccgtataccacgggtatggaAAAAACATTTTTAGTTCTCTAAtcacattggtaaccagtttataaaagcaataaggcacctcaggggtttgtggtatatggccaatatgccaaggctaagggctgtatccaggcactctgcattgcgTCGTACACAAGAATAGcacttagctgtggtatattggcaataccCCCCCCCGGGCCTTATTGCGTAATTCTACCATGTCAGAGAGGCTTGGGTGTTCTTCATAACATAGTggtttgcaaaagtattcacctcccttggcatttttcatatGTTTTGCCTTagaacctggaattaaaatagatttttgggcggtttgtatcatttgatttacacaacatgcctaccaccttGAAAAAGACAACTATTCACCCcccagtcaatactttgtagagccaccttttgtagCAACTACAGCTGGAAGTCTCTTCTGGTAtcaataagcttggcacatctagccactgggatttttgcccaatTTTCTAGGCAGAACTGCCTGACTAGGCCAttcaaagacatttaaatgtttccccttaaaccacttgagtgttgctttagcgtATGCTCAGggtcctgctggaaggtggagatctgtcccagtctcaaatctctggaagacaaacaggtttctcaagaatttccctgtatttagcgccatccattatTCCTTCAAttatgaccagtttcccagtccctgccggtgaaaaacatccccacagcatgatgctgcaaccaccatgcttcactgtggggatggtgttctcggggtgatgacgggtgttgggtttgcgccagacagcatttttcttgatggccaaaaagctcaattttagccTCATCTGACCAgggtaccttcttccatatgtttggggagtcgccttttggcgaacatcaaacatgtttgcttatatttctggccactctcccgtaaagcccagctctgtggagtgtacggcttaaagtggtcctatggacagatactccaatctccgttgtgtagctttgcagctccttcaggattatctttgtgctctttgttgcctctctgattaatgccctctttgcctggtctgtgagttttggtgggtggaccgctctggcaggtttgttgtagtgccatattcttttcatattttaataatggatttaatggtgctccgtgtgATGTTCAaggttataaaaaaaaatctaactgaaccctgatctgtacttccaAACAGGTCAAGAACAAAGTTGTGATTGAGgttttcatggtgccgcttgcttgctggtgccccttgcttagtggtgttgtagactctggggcctttcagaacagatatatatatatatatatatCACGTGACACTTaattaaagtccacctgtgtgcaatctatgtgacttctgaaggtaattggttgcatcagattttatttaggggcttcatagcaaatataaatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1548843 False 2653 lncRNA 0.40 2 24201980 24204658
TU1548846 True 2559 lncRNA 0.40 2 24201980 24204568

Neighbor

gene id symbol gene type direction distance location
LOC110491682 rpl19 coding downstream 98677 24085708 ~ 24103303 (-)
LOC110492858 LOC106579369 coding downstream 191872 23995179 ~ 24034410 (-)
LOC110491678 LOC106579370 coding downstream 312361 23856243 ~ 23889619 (-)
LOC110491677 pnmt coding downstream 369522 23827897 ~ 23832458 (-)
LOC110491676 LOC106579149 coding downstream 377092 23782451 ~ 23824888 (-)
LOC110491687 LOC106579141 coding upstream 96620 24301278 ~ 24334350 (-)
LOC110491688 NA coding upstream 135643 24340301 ~ 24351205 (-)
LOC110491691 ptrf coding upstream 324321 24528979 ~ 24552503 (-)
LOC110491696 crp coding upstream 406889 24611547 ~ 24613120 (-)
LOC110491700 LOC106579130 coding upstream 500199 24704857 ~ 24725950 (-)
G1354952 NA non-coding downstream 33249 24166430 ~ 24168731 (-)
G1354915 NA non-coding downstream 101210 24100299 ~ 24100770 (-)
G1354911 NA non-coding downstream 107262 24094413 ~ 24094718 (-)
G1354909 NA non-coding downstream 109513 24092140 ~ 24092467 (-)
G1354906 NA non-coding downstream 117153 24084481 ~ 24084827 (-)
G1355005 NA non-coding upstream 31966 24236624 ~ 24237039 (-)
G1355009 NA non-coding upstream 35198 24239856 ~ 24240069 (-)
G1355012 NA non-coding upstream 37866 24242524 ~ 24243164 (-)
G1355016 NA non-coding upstream 42439 24247097 ~ 24247386 (-)
G1355017 NA non-coding upstream 43178 24247836 ~ 24248128 (-)
G1354433 LOC106581475 other downstream 743433 23451825 ~ 23458547 (-)
G1354351 NA other downstream 882588 23318569 ~ 23319392 (-)
G1353762 NA other downstream 1157219 23043249 ~ 23044761 (-)
G1353300 NA other downstream 1559878 22641414 ~ 22642102 (-)
LOC110491708 LOC106561205 other upstream 680208 24884866 ~ 24889077 (-)
G1357833 NA other upstream 2522637 26727295 ~ 26727828 (-)
LOC110491745 LOC106609103 other upstream 2524646 26729304 ~ 26744821 (-)
G1359119 NA other upstream 2907125 27111783 ~ 27113401 (-)
G1359321 NA other upstream 3152626 27357284 ~ 27359562 (-)

Expression


Co-expression Network