XLOC_003244 (pla2r1)


Basic Information

Item Value
gene id XLOC_003244
gene name pla2r1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11021396 ~ 11109963 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006392
atgagcattttatcagcctcctatgtttatatTATGTTGGCTTACATTAAATTTAATGAAAATCATTTGAAAAAATCTACTCTATGCCATCTACACATAGGAATGTGAAAAAATCCTCATTTTAGAAGATCATTTCAGATTCCTCTGAACTATTCAAATGCTTTTCAATGCTTTGTGCAAGAATGTTCAAACTCGACTTACATTAGATATACTGCAGTGACTTGAACATAAGCTTTATATGTAAAGGAACATAAATAGCCTACTTATTGCTACCTTTGTACGTATACGATTAAATGAAGGAGAGATTTGTGAAACATTGTGCGACGCGACGCAACGGGAATCTGCGCTTCTTCCTGTCAGCGTCCAAATTTGTTCGCGTCGCGGTCAGAACAGACGGGCTGTAAACGGAGAGGGAATATTTTGCCTTTTTACTGCCCCACAGAGAGACCGTGACGTAGAGAATCCAAAAACTTGCGGAAAGTGTGTGGAAAAAACAGGCTGCCGTCTGTGCAGCGCGCTCGTCTCCTGTGGAAATGCGAGGATACAGTAAAACTCTTCAAGTTCGCTTCCATGAAGCGCTTTCTGTCCTTTATGTGCTGCTTTATGTCAGTAATTTCGCTCTTGCTGCTGCGGAAGTGTCGGACAAAACTGAAGTTTGGGACAAAACTCAACTTCTCGAAGTGTACAGTAAAGGTGTTTTCCGGTTGGAGAGTGTATCACAGAAGCGTTGTCTCTCAGCTGACTCCTCGGGTCTATCGATGTCCAGCTGTGACCCCTCGTCTCCTGCCCTGCTTTGGAAATGGGTGTCCCGGCACCGACTATACAATCTGGGCACCAGTCGATGCCTAGGGATCAACACGACCAAGCAGCATGACGTTGGCATCTTTGAGTGCGATGTTTCCCTCCCAAGCATGTGGTGGCGCTGTGGGGGTGGCATGTTGTATGGAGCGATGAATAATAAGCTAGTGGCAGTGGACTCAAAAGTGGTGGTGAGAAGAGGTGCTCTGCATCAGTGGAGGATTTTTGGGGCGGCTGGTGAAGGGCCATGTGCTTACCCATATGAAGACATTCACACACTTCAAGGAAACTCTCATGGCATGACCTGCTCCATACCCTTCAACTATAACAATAAATGGTTCTGGGACTGTACCTCAGAGGGCAGAGAGGACCGTCACCTCTGGTGTGCCACCACCAACCGCTATGATCAAGATGAGAAATGGGGTTTCTGTCCAAacccagtgtcagGCTGCAATGAATTCTGGGAGAGCCATCCAGAGCTGAATGCCTGTTACCAGTTTAACTTATACTCCATCCTAACCTGGAGCCAAGCTCTTACCTCCTGTCAAGCGCAAGGTGGAAGTCTTCTGTCCATCACACAGTCCAGTGAACAGAACTATATCAAAGGAAGACTCTCAGATATGGGTGTGATGGTCTGGATTGGATTAAACCATCTCAGTCAGCACGGGGGATGGCAGTGGTCTGATGGATCTCCTTTGAGCCTTGTCGGTTATACTGCAGATCTGAGCTCCACACCAGTGCAGCAGAACCAGCAGTGTGGGCTGTTTAACTCCACTCTCGGCTCCTGGCAGAGTCTGTCCTGTGAGTCAGCCCTGCCTTACATCTGCAAGAAAACCACCAACTACAGCCGGAATGCCGAGCCGCTTGATAACTGGCAATATAAGGAGACGATTTGTCCTGACGGTTGGCTGGACCACAATGGTTTCTGTTACCTGTACCTGAAGGAGAAGGCGAGCTGGGACAACTCTTCCAGTGCATGCAGAGCTCTTGAGGCAGAGCTGGTCAGCATCCACTCCCTGTCCCAACAGGAAGTACTGCTCAAACTGCTCTCCCTTGAACCCAACTCTAAGGTGTGGATCGGTTTGCACAAAGAGGCCACACTTCAAACAGTCCAATGGTCGGACAAATCTCCAGTCAAATTCATATCATGGAACTCACAGGAGCCTACACGTCGATATGATGACAAGCGCATCTGCGTTACCGCAGACCCGAAGCAAGGCAGATGGCAGTTCGAGGAGTGTGAAGAGCAAAACGCAGCGATTTGTAAAGCATCAGGGCTTGTTCCTCAGCGTCCTGCTGGAGAATGGGATGAAGGATGTCCAGAGGGCTGGAGAAGGAAGGACAACTGGTGTTATAAGATCACAGATCAGGAGCAGACATTTCAGGATGCTGTGAAAGGATATTATTGCAAATCACCTCTTGTCACGATAGAAAGCAGGTTTGAGCAGGCCTTTCTAAAAAGTCTGATCAGTGAAATGGGAGGCTCTGACTCTCAATACTATTGGACAGCTTTACAAGACCTGAACAGAACAGAAGAGTATCGCTGGCTGACTCAGAATGGCTCAACAACACCCCTCACCTACACCAACTGGAATCGACACCAGCCGGTGAGTTTAGGTGCGTGTGTGGTGATGTCTGGCGGTCGAGCTCTGGGTCACTGGGAGGTGAAAAACTGTCACACTTTTAAGGCTCTGGCTGTttgcaaacaggaagtgagtggAGATCATGACACTCTGACGCCTGCACCACACATAGATATAAATGCAGCCTGTCCAACTGGATGGGAGAGCCACAGTGGACTGTCTCACTGTTACAAGGTGTATCACGATGAAAAGATCTTGATGCAGCGTACTTGGACAGAGGCTGAGTTCTTCTGCCGAACTTTGGGTGCTGATCTGGCTAGTTTTCATCACTATGAAGATCAAGCTTTCGTCAAAAAAATCCTCTCTGTGATGTTCCAAAGTACAGAGGGTCGCTGGTTTTGGGTGGGCTTTACTAAGAGAAACCCTTCTTCTGATGGAGCCTGGGAGTGGTCAGATGGCACACCGGTGGTGACATCGTTCATTGAGGATATGAATGAAGCAGACTCTCACATGTGTGCTGCGTACAGTGACCTCACAAACACTCTCACTCCTCACTCCTGTGACTCCAAATATGAATGGATTTGCAAAGTGCCTCGAGGTTTGTGA
>TCONS_00006393
ATCTGCGCTTCTTCCTGTCAGCGTCCAAATTTGTTCGCGTCGCGGTCAGAACAGACGGGCTGTAAACGGAGAGGGAATATTTTGCCTTTTTACTGCCCCACAGAGAGACCGTGACGTAGAGAATCCAAAAACTTGCGGAAAGTGTGTGGAAAAAACAGGCTGCCGTCTGTGCAGCGCGCTCGTCTCCTGTGGAAATGCGAGGATACAGTAAAACTCTTCAAGTTCGCTTCCATGAAGCGCTTTCTGTCCTTTATGTGCTGCTTTATGTCAGTAATTTCGCTCTTGCTGCTGCGGAAGTGTCGGACAAAACTGAAGTTTGGGACAAAACTCAACTTCTCGAAGTGTACAGTAAAGGTGTTTTCCGGTTGGAGAGTGTATCACAGAAGCGTTGTCTCTCAGCTGACTCCTCGGGTCTATCGATGTCCAGCTGTGACCCCTCGTCTCCTGCCCTGCTTTGGAAATGGGTGTCCCGGCACCGACTATACAATCTGGGCACCAGTCGATGCCTAGGGATCAACACGACCAAGCAGCATGACGTTGGCATCTTTGAGTGCGATGTTTCCCTCCCAAGCATGTGGTGGCGCTGTGGGGGTGGCATGTTGTATGGAGCGATGAATAATAAGCTAGTGGCAGTGGACTCAAAAGTGGTGGTGAGAAGAGGTGCTCTGCATCAGTGGAGGATTTTTGGGGCGGCTGGTGAAGGGCCATGTGCTTACCCATATGAAGACATTCACACACTTCAAGGAAACTCTCATGGCATGACCTGCTCCATACCCTTCAACTATAACAATAAATGGTTCTGGGACTGTACCTCAGAGGGCAGAGAGGACCGTCACCTCTGGTGTGCCACCACCAACCGCTATGATCAAGATGAGAAATGGGGTTTCTGTCCAAacccagtgtcagGCTGCAATGAATTCTGGGAGAGCCATCCAGAGCTGAATGCCTGTTACCAGTTTAACTTATACTCCATCCTAACCTGGAGCCAAGCTCTTACCTCCTGTCAAGCGCAAGGTGGAAGTCTTCTGTCCATCACACAGTCCAGTGAACAGAACTATATCAAAGGAAGACTCTCAGATATGGGTGTGATGGTCTGGATTGGATTAAACCATCTCAGTCAGCACGGGGGATGGCAGTGGTCTGATGGATCTCCTTTGAGCCTTGTCGGTTATACTGCAGGT
>TCONS_00006394
ATggttaGCTTGACCAATATCTCACTTTCCTTTCGCTTGTGTTTGTGTGACCCAGGTAAAGGTGTTTTCCGGTTGGAGAGTGTATCACAGAAGCGTTGTCTCTCAGCTGACTCCTCGGGTCTATCGATGTCCAGCTGTGACCCCTCGTCTCCTGCCCTGCTTTGGAAATGGGTGTCCCGGCACCGACTATACAATCTGGGCACCAGTCGATGCCTAGGGATCAACACGACCAAGCAGCATGACGTTGGCATCTTTGAGTGCGATGTTTCCCTCCCAAGCATGTGGTGGCGCTGTGGGGGTGGCATGTTGTATGGAGCGATGAATAATAAGCTAGTGGCAGTGGACTCAAAAGTGGTGGTGAGAAGAGGTGCTCTGCATCAGTGGAGGATTTTTGGGGCGGCTGGTGAAGGGCCATGTGCTTACCCATATGAAGACATTCACACACTTCAAGGAAACTCTCATGGCATGACCTGCTCCATACCCTTCAACTATAACAATAAATGGTTCTGGGACTGTACCTCAGAGGGCAGAGAGGACCGTCACCTCTGGTGTGCCACCACCAACCGCTATGATCAAGATGAGAAATGGGGTTTCTGTCCAAacccagtgtcagGCTGCAATGAATTCTGGGAGAGCCATCCAGAGCTGAATGCCTGTTACCAGTTTAACTTATACTCCATCCTAACCTGGAGCCAAGCTCTTACCTCCTGTCAAGCGCAAGGTGGAAGTCTTCTGTCCATCACACAGTCCAGTGAACAGAACTATATCAAAGGAAGACTCTCAGATATGGGTGTGATGGTCTGGATTGGATTAAACCATCTCAGTCAGCACGGGGGATGGCAGTGGTCTGATGGATCTCCTTTGAGCCTTGTCGGTTATACTGCAGATCTGAGCTCCACACCAGTGCAGCAGAACCAGCAGTGTGGGCTGTTTAACTCCACTCTCGGCTCCTGGCAGAGTCTGTCCTGTGAGTCAGCCCTGCCTTACATCTGCAAGAAAACCACCAACTACAGCCGGAATGCCGAGCCGCTTGATAACTGGCAATATAAGGAGACGATTTGTCCTGACGGTTGGCTGGACCACAATGGTTTCTGTTACCTGTACCTGAAGGAGAAGGCGAGCTGGGACAACTCTTCCAGTGCATGCAGAGCTCTTGAGGCAGAGCTGGTCAGCATCCACTCCCTGTCCCAACAGGAAGTACTGCTCAAACTGCTCTCCCTTGAACCCAACTCTAAGGTGTGGATCGGTTTGCACAAAGAGGCCACACTTCAAACAGTCCAATGGTCGGACAAATCTCCAGTCAAATTCATATCATGGAACTCACAGGAGCCTACACGTCGATATGATGACAAGCGCATCTGCGTTACCGCAGACCCGAAGCAAGGCAGATGGCAGTTCGAGGAGTGTGAAGAGCAAAACGCAGCGATTTGTAAAGCATCAGGGCTTGTTCCTCAGCGTCCTGCTGGAGAATGGGATGAAGGATGTCCAGAGGGCTGGAGAAGGAAGGACAACTGGTGTTATAAGATCACAGATCAGGAGCAGACATTTCAGGATGCTGTGAAAGGATATTATTGCAAATCACCTCTTGTCACGATAGAAAGCAGGTTTGAGCAGGCCTTTCTAAAAAGTCTGATCAGTGAAATGGGAGGCTCTGACTCTCAATACTATTGGACAGCTTTACAAGACCTGAACAGAACAGAAGAGTATCGCTGGCTGACTCAGAATGGCTCAACAACACCCCTCACCTACACCAACTGGAATCGACACCAGCCGGTGAGTTTAGGTGCGTGTGTGGTGATGTCTGGCGGTCGAGCTCTGGGTCACTGGGAGGTGAAAAACTGTCACACTTTTAAGGCTCTGGCTGTttgcaaacaggaagtgagtggAGATCATGACACTCTGACGCCTGCACCACACATAGATATAAATGCAGCCTGTCCAACTGGATGGGAGAGCCACAGTGGACTGTCTCACTGTTACAAGGTGTATCACGATGAAAAGATCTTGATGCAGCGTACTTGGACAGAGGCTGAGTTCTTCTGCCGAACTTTGGGTGCTGATCTGGCTAGTTTTCATCACTATGAAGATCAAGCTTTCGTCAAAAAAATCCTCTCTGTGATGTTCCAAAGTACAGAGGGTCGCTGGTTTTGGGTGGGCTTTACTAAGAGAAACCCTTCTTCTGATGGAGCCTGGGAGTGGTCAGATGGCACACCGGTGGTGACATCGTTCATTGAGGATATGAATGAAGCAGACTCTCACATGTGTGCTGCGTACAGTGACCTCACAAACACTCTCACTCCTCACTCCTGTGACTCCAAATATGAATGGATTTGCAAAGTGCCTCGAGGTGTGGAGCTGGTCAAGCCATACTGGTACAGCGACCAACATGCACCATGGTTCTTTTTCCACGAAGCTGAATATTACTTTGCCAGTAAGCAGTTTCCCTGGCAGTCTGTCTCTTTCACCTGCAAGATGATGGGCGCTGATCTGCTCTCTATCCACTCTAGTGAAGAACTGGACTTTGTCAAAGGACACATTACTAAGGTAACTTTATTTAAAGTTTGGACTGATGGATCTGCTCTGGATTACGAGAACTGGGAAAACGGTCAATTTTCCAGAAAGCCTGGTCAAAATTGTATCCAAATGTCGGCTCAGTCTGGTCAGTGGTCTGCAGGAAGCTGTAAAGATCCTCGTGGTTATGTGTGCAAACGCAGAACGGTGTCTGTGGTGGAGGTTCCACAAGAGCCTTACTATATCGGCAGCTGCCCAGAGAACTGGCTTTACTACGGACACAAGTGTCTGTATGTGTATCTCCCGGACCGTCCAGAAAAGGGGAAGAGCTGGCAGGAGGCTCAGGCTGTGTGCTCGGCCAATCAGGGCTCTCTGGTGTCCATCAAGGATGAGATCGAACAAGcCTATATCGTCATGATGCTTCATGGCTCGTCAGCGGGGGTTTGGATCGGTGTGCAAGGACGTTTTTCTTCCAAATGGAGCAACAAGAAGCCGATCGTCTACAGTAACTGGGAGAGGATTAATTATAGATCTCCTGAAGTACCTCATTGCACTTTCCTGTCCAACAGCCACAACTTCCGCTTGACAGGGATTTGGCAAGATGACGTCTGTACTGAAAAGATATATGGCTTTGTCTGCGAGAAAGCGCAAGACACCACCAAGCGTCCCACTCACTCCTATCACACTGCATCCTCTCTGGGCACATCTGAGTTCAGGAACCACACTTATCTGGTCGCCCATGGCAACATGAGCTGGTACGAGGCCCAGGAAAGGTGTTTGGTGAAGGGGGCAACACTCGTGAGCATCACAGACCCATTTCAGCAAGCTTATCTGACCTTTCTGATCAACAGACTGGACGCCCCGCATTGGATCGGCTTATACAGCACAGACGATGGCATATCCCACCAGTGGTCTGATGGAAGTGAGGGATGGTTTACTCATTGGGAAGATTCAAATTATTACCCTGAAGGGCCGGTGGGAGATGGAGGCTGCGTGTCTATGGATACTAATGGACGCTGGAGAGACAATGAATGTGACATGAGGTTATCAGGAGCGATATGCTACATACCCCCACCCAAGAGCATTGCTTTCTCCTTTGAAGTGGTGTGTCCTGATACCTGGGTGAAGTTTCGCGGGAGCTGCTATTATTTTAAAACCGTGATATCAAAGAAGACACAAGAAGAAGCCAGAAATCACTGTAAAGCAAATGgaaaTTCTTCTGAGCTTCTGACCATTCAGGATGATGAGGAGAGCCGCTTCTTCCTTAAAGAGATGTGGCATTACTACCAGGGCCCTCAGAATTTATGGCTGGGAGTCTTGTATAATGATAAAAATGGTGTTTTGGCTCGTTTGGATGGCTCTCAGCTGCAGTACACGAACTGGCGATCCAGAGTTCCAGATGAGCAGGAGATGAGGAAACAGCCATGTGTGTCTATGCGGGTATCAGATGCGGTTTGGCAGTTAGCAGACTGCACCGAACGACTGGGCTTCATCTGTAAAACCTCAACAGAGGTTGAAGTGGAGCCACTGAAAGGTCTCCACCAGGGCGTCATCTCAGTGGCTGCATTGGTGGCCATTTTACTGTTCGCAGTGGTAATCGGATCACTGTGGCTCCTTTACAAGAGAAACTCTCTGTGCTTCCGGAGGCTTCCAACGTTTGGCAGCGCCTATTACAGACAGACAAACTCCCAAGCCAGTGACCAAGATGAAAACGTTTTACTGCCAGAACTAGAGACCCAAGCAGGGGACTAG
>TCONS_00008390
AATCATATAACATTATAGTGAGTCACTATATGTTACGATATTGTTTTATGAGAAATGCTTTACTTGATATTTACTGTCGTTCATGTCTGTTCAGGTGTATCACGATGAAAAGATCTTGATGCAGCGTACTTGGACAGAGGCTGAGTTCTTCTGCCGAACTTTGGGTGCTGATCTGGCTAGTTTTCATCACTATGAAGATCAAGCTTTCGTCAAAAAAATCCTCTCTGTGATGTTCCAAAGGTTGGTTTACAAGTTTTTCTAGTTGGTTTATACAtcacttaaaggttcaggac

Function

symbol description
pla2r1 Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLA2R1 (phospholipase A2 receptor 1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120323-1 Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLA2R1 (phospholipase A2 receptor 1).

Ensembl:

ensembl_id ENSDARG00000077474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006392 False 2987 mRNA 0.48 15 11021396 11075105
TCONS_00006393 False 1181 mRNA 0.50 5 11021735 11039478
TCONS_00006394 False 4263 mRNA 0.49 29 11030908 11109963
TCONS_00008390 True 293 lncRNA 0.37 1 11065500 11065792

Neighbor

gene id symbol gene type direction distance location
XLOC_003243 itgb6 coding upstream 539 10975012 ~ 11020857 (+)
XLOC_003242 rbms1a coding upstream 61002 10909183 ~ 10960394 (+)
XLOC_003241 NA coding upstream 348388 10669135 ~ 10673008 (+)
XLOC_003240 b3gnt5a coding upstream 471019 10541258 ~ 10550377 (+)
XLOC_003239 CT990625.1 coding upstream 483993 10535456 ~ 10537403 (+)
XLOC_003245 ly75 coding downstream 10569 11120532 ~ 11193205 (+)
XLOC_003246 CR847973.1 coding downstream 65851 11175814 ~ 11181077 (+)
XLOC_003247 myom2a coding downstream 90587 11200550 ~ 11262062 (+)
XLOC_003248 ptp4a1 coding downstream 157530 11267493 ~ 11274919 (+)
XLOC_003249 si:dkey-23f9.4 coding downstream 193495 11303458 ~ 11319853 (+)
XLOC_003250 BX324177.11 misc downstream 235840 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 262923 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 276399 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 308070 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 319430 11429393 ~ 11429689 (+)
XLOC_003238 BX005472.1 non-coding upstream 1122766 9898513 ~ 9898630 (+)
XLOC_003237 NA non-coding upstream 1418326 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 non-coding upstream 1499323 9511533 ~ 9522073 (+)
XLOC_003252 BX324177.5 non-coding downstream 243496 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding downstream 249458 11359421 ~ 11359715 (+)
XLOC_003268 NA non-coding downstream 394051 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 non-coding downstream 478115 11588078 ~ 11590676 (+)
XLOC_003271 CR848705.1 non-coding downstream 682445 11792408 ~ 11796299 (+)

Expression


Co-expression Network