G1344991 (cssa19h10orf88)


Basic Information

Item Value
gene id G1344991
gene name cssa19h10orf88
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 15172138 ~ 15175233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1537692
gtataaatatatttattttcactCTTGATCATACAGTGCAGTTATTTAAACCAGTCTGTTAATACACAGAATATGAAAGAGAGTCAAATTTACAACAGTTAGACATTATTTTACAAACATGCACAAGTGGTAAAACTACAGTAAAATAAGCAGCTTGTCTCTGGGGAGTTGGGTGATTGGGTTCAGGTTATTGGGTGTGGGTTATTGGTCGCAGCCAGTGTAGGGGCTGTGCATGGGGCAGGGGATAAGGTAGGGGCTGGAGTCAGTGGGGGCTAGGGCTGGGGATAAGGTAGGGGCTGGAGCCAATGCAATGGGCTAAAGTCAGTGGGGGCTGGGGATAAGGTAGGGGATGTGGCAGGGGCTGTGGCTTGGGTAGAGGCCGGAGTTGGGATGGAGTTAGTGCAGGGCCTGAGGCTGGTCAGGCGTGGGTGCTGTGGTCTTGAGGTGGTTAAGGGGAAGGGCCAGGGTCTGCAGTAAGGCCGTTTCCAGGCGCGGGCCGTTGGATGTCTTTGAGGCATCCTCGATGCGGAGCTGCGTCACCTGCCCACACACACTTTGCAGCATAGGGAGCAAGTCTGGGCTGATGCATGGCCTCCGTCCTCCTGGCTGGCCGTTAAGAAAGGGTGACATCATGTCTGCCAGGCCGGTGTGAGTATCGCAGGCTGCACGAGACTGGGGCCATGGATctgaggaggcagagtcagacatcTCGTCTGGCTGGAGGCTAGTGTTGACTGAGGGGTGTTGAATGTCAGCTGGAGCTGAAGAGGGTCCGTTAGTTACTCTAGCAAGAGCAGAGAGAGCCCCACTGCTCACGAGGAGGGGCAGAAACCCACTCAGTGAGTCAGCTTTGTTCTGGAAAAAAAATACCAAAGAGCTCGATTTACCATACAATACAGCGATT
>TU1537694
gtataaatatatttattttcactCTTGATCATACAGTGCAGTTATTTAAACCAGTCTGTTAATACACAGAATATGAAAGAGAGTCAAATTTACAACAGTTAGACATTATTTTACAAACATGCACAAGTGGTAAAACTACAGTAAAATAAGCAGCTTGTCTCTGGGGAGTTGGGTGATTGGGTTCAGGTTATTGGGTGTGGGTTATTGGTCGCAGCCAGTGTAGGGGCTGTGCATGGGGCAGGGGATAAGGTAGGGGCTGGAGTCAGTGGGGGCTAGGGCTGGGGATAAGGTAGGGGCTGGAGCCAATGCAATGGGCTAAAGTCAGTGGGGGCTGGGGATAAGGTAGGGGATGTGGCAGGGGCTGTGGCTTGGGTAGAGGCCGGAGTTGGGATGGAGTTAGTGCAGGGCCTGAGGCTGGTCAGGCGTGGGTGCTGTGGTCTTGAGGTGGTTAAGGGGAAGGGCCAGGGTCTGCAGTAAGGCCGTTTCCAGGCGCAGCTGCATGGCATCCAGTCGCTGGTCCATGTGTTCCATCAGCCTCCTCTCCATCTCGCCCAGACATCTCTCCAGGACCTGCTCCAGCCCTCTGCAGCATGCATGCTCCTGCCGCGGGCCGTTGGATGTCTTTGAGGCATCCTCGATGCGGAGCTGCGTCACCTGCCCACACACACTTTGCAGCATAGGGAGCAAGTCTGGGCTGATGCATGGCCTCCGTCCTCCTGGCTGGCCGTTAAGAAAGGGTGACATCATGTCTGCCAGGCCGGTGTGAGTATCGCAGGCTGCACGAGACTGGGGCCATGGATctgaggaggcagagtcagacatcTCGTCTGGCTGGAGGCTAGTGTTGACTGAGGGGTGTTGAATGTCAGCTGGAGCTGAAGAGGGTCCGTTAGTTACTCTAGCAAGAGCAGAGAGAGCCCCACTGCTCACGAGGAGGGGCAGAAACCCACTCAGTGAGTCAGCTTTGTTCTTCTGCTGAAACTGGACCATGTTCATGAGGCTCTGGGCCCCCGGTGAGAGGCTGGCGCCCATCTCCTCCACCATGGACTGCACACGGAGCATGTCGATGCTGGGCCCCAGGCTCAGAGAGCAGTCCACAGGTGTCAGTGTCTGTAGGCCCATCACGACCCGAGCCACAGCTACGCTCCCTCGCCCACCAAGAGACAGCAGCTTCACCTCACATGATGCGGCGGGGGACTCCAATATTAAGTGTTTCCTGTAGAAGGGTCCTCTCTCTGCACTGTCAGGCTGTGTGTTGGGGTCTCTTTCCCCGCGACTGGTGCCACAGTAGTCCCCAGCCTGGGAGTAGACCTCAATTGTGCGGGCCTCGCTGGTCACCAGCAGGCTGGTGATGAGGGCAGGGCAGTGGGGTGCACAGCACAGGGTGATGACACACGGAGACCCCTGCTCAACCTGCTCCAGGAGCACTGGAACACACCTGAGGACAAACAAGAGAGTGATCAA

Function

NR:

description
uncharacterized protein C10orf88 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1537692 False 904 lncRNA 0.53 2 15172138 15173515
TU1537694 True 1464 lncRNA 0.56 5 15172138 15175233

Neighbor

gene id symbol gene type direction distance location
htra1b LOC106578991 coding upstream 5978 15131882 ~ 15166160 (+)
plekha1b plekha1 coding upstream 46673 15079689 ~ 15125465 (+)
btbd16 LOC106578989 coding upstream 97437 15061491 ~ 15074701 (+)
atoh1c LOC106578988 coding upstream 176857 14994459 ~ 14995281 (+)
LOC118939512 NA coding upstream 824931 14340825 ~ 14347207 (+)
LOC110491425 LOC106578992 coding downstream 1497 15176730 ~ 15191712 (+)
LOC110491423 NA coding downstream 48485 15223718 ~ 15236140 (+)
get4 LOC100136505 coding downstream 73530 15248763 ~ 15253576 (+)
LOC110491432 LOC106589354 coding downstream 87066 15262299 ~ 15274695 (+)
LOC110491433 LOC106578996 coding downstream 117385 15292618 ~ 15304489 (+)
G1344987 NA non-coding upstream 70567 15096264 ~ 15101571 (+)
G1345006 NA non-coding upstream 72796 15098375 ~ 15099342 (+)
G1345004 NA non-coding upstream 73134 15097292 ~ 15099004 (+)
G1344977 NA non-coding upstream 96587 15075106 ~ 15075551 (+)
G1344956 NA non-coding upstream 120364 15051298 ~ 15051774 (+)
G1345046 NA non-coding downstream 33790 15209023 ~ 15209300 (+)
G1345101 LOC106578995 non-coding downstream 115624 15290857 ~ 15292304 (+)
G1345119 NA non-coding downstream 159453 15334686 ~ 15338797 (+)
G1345134 LOC106579000 non-coding downstream 202969 15378202 ~ 15378678 (+)
G1345136 NA non-coding downstream 208599 15383832 ~ 15384116 (+)
LOC110491400 NA other upstream 1413806 13753527 ~ 13758332 (+)
G1342713 LOC106578962 other upstream 1578510 13591288 ~ 13636378 (+)
G1342581 NA other upstream 1890319 13281441 ~ 13281819 (+)
G1341820 NA other upstream 2703017 12467440 ~ 12469121 (+)
LOC110491390 LOC106578939 other upstream 2768716 12402185 ~ 12403794 (+)
G1345084 LOC106578999 other downstream 104820 15280053 ~ 15367456 (+)
G1345170 NA other downstream 307914 15483147 ~ 15483513 (+)
G1345417 LOC106579048 other downstream 348769 15524002 ~ 15524568 (+)
G1345431 NA other downstream 367158 15542391 ~ 15543537 (+)

Expression


Co-expression Network