G1345084 (LOC106578999)


Basic Information

Item Value
gene id G1345084
gene name LOC106578999
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 15280053 ~ 15367456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1537796
ctgaaggcactgtaacagtACCATAGTGGGATATAATGCTCATCACAGATGTATAAAATAAGaattttataaactgggtggtttgagccctgaatgctgattggctaaaagcagtggtatatcagaccactggtatgacatttatttttactgttataattacgttggtaaccagtttataatggcaataaggcacctcgggggtttgtggtatatggccaatatccaTCGCTACGGGTTGTATCCAGTCACTTcgcgttgtgcctaagaacagcccttagctatggtatattggcaatataccacacccctctCAGATATGTGTTTTAGATTTCAGATTTAAGGAATATATTAatggaaaaaaatacatttaaATATTCATAACATATAAACAAGAGGATTTACTTCTAAATCTAATCCAATTTCTCAAACAAAATGACGCACAGAGGGGTTGGTCAAATTCATCGAAGGCAACTCATTTCATCCCCGTGCTGCGGCAGTTATTGATCTGTATATTTTCAGGTGCAAAAATAACGCTTTCATAAGGTGcctaaataataatgtgcaatcTACTATTTTAAGATTTCGAATAAGAGAACCAAAATAGCTTTCCTTGGGGTGGATATATTATACCACAGATACATTATGTCAGGTTACAGAAAAATGACGATAATAAATGACATTTCTGTTAGAAATTACACAGGAAAAATAACATAATTCCAAATACAGGACAAACAAAGTAAGCATTTAAAGGAAAGAGAAATTAAAACATGACCACTATTTCCCTTTATCTTGCTTTAAAAGCTTGGCTGCAATGATTCTCTGTGCAACACTCAGAGCATCATTTGCCTGGGCAGCAACGTGTGGCTCGACCCCAGAGACACTCCACACCTTCCCAGTAACAGCACTCAGGACCACCTGGTTAGGTATGGAAGCATACAGGATACTATTCCCGATCTGGTAGGTGCCGCTGGACAGGGACCCTCCGATGGTCGGCTCCCCAATCACCTTCACTCTGTTCAGGTCCTTCATGGCCCGCGTGAACACTTCGGCAGCTGACCCTGTCATTTGACTAGTGAGGATGTAGATATCCTTGGTGGAGCCGTACCTCTGACCCTGGATCTGAGGCAGGGTCATGACCTCGGTCATGGTGGTTGTAGAGCGGTCAAAGACGGTGTAAAGATGCCTCAGGGGCTCAGCATCGAAGAAGTAGGTACAGAGGAGCGGTATGGCTGTGGAGTAACCACCTGTGTTGTATCTCATGTCAATGATCATTGTGTCCGTGTTCACCAGCTTGCTCCACACCAGTTTGATCAACTGAGGGCCGATGGCTCTCATCACTTCTATGTCTGCCATCATATCGAACCTCAGATAGCCCACGTTCCCAGGCATCACCTCGATCTTGAACAGCGTGTCAATGATGTAACCCACCTCCTGAGCTGTTGGAATTTTTGGCATGTCATGCAGAGACTCGGGTTCGATGTCGCAGTAGAATATGTGCAGCCGGTGGTCGCCTGACGTCTCCTGGAGGTCAGCTGTTAGCTGGGATGCCAGAGACTCATAGTCGACCACTGATCGATATGAGCCCTCGGCCCATTTGGTGAGCAGCACTCTACTGACCTTGGTAGCGACCTCAGGGATGGCATAGTGTACTTCCAAGAGCTCCCCTGTTCCCTCCACCAGTGACAGAACCTCCTTGTGAAACTCTATTATCTCATGGGCGTGGTTCACGGCCTCCTCAGCAAGCACTATGGCATCGGGGACCACGCCTCCACCTAGCCAGCACTCCCCGTTGTTGTCTATGAAGTTTATGAAGGGGACGGTGATGACAATGTCTGTGTCTTCCACCTGGAATGACTTGGAGTGCATCAGGGTCCCAGATGTGATTTCCCCGATGAGGGTGCCACGGTGCAGCGACTGCATCAGATAAGCAAATTCCTCCCCTGCACTGGCGGTATAGTGACTAGTCAGGATGTACACTCCACGTTTAGACCCGTAGGGTGGGCCTAGGAGGCCGGAAAGCGTGTTAAACTCAGTGGTGGTGTTCTGGATCCTGTCGTATATGGTGAAGAAGTGGAACTGTTGTGACGGGTCTTGAAGGAAGGAGAGCAGGATGCCCATGGAAGCTGAGGACCCGCCTGTGTTGTATCGCAGGTCGATGATGAGGTTCTCTGTGTCTTTGAGGGCCTCCCAGATTTTTTGGGCAATCTGCTCTCCTAATTTGGCCATCACTGACACGTCTCCAAACTTGTCGAAGCGGAGATAACCAGTGTTTCCAGTTAGGATGCGTACTTTGAAGACTGTGTCCACCAAGTTCCTGAGAAATGCTGGATCACCTGGTATGTTCTCAGGTTCAAAGTCTTCCTCAATGATAACCGggtgatcttgggtcagtttgaTCATCAGACGAGGGTCCTCTGACACAGACTGCAGTTCATTGTTGAGTTTATTCGCCAGGTCCTCCTCTGAAATGACAGAGAAGAAATCAGTGGATTCCAGATGTTGAAGGAAAGCCGGTACTCTGTCTGTGAATGAGTAGTACTGCCTGATGATGTCAGAGACGCTCTGGATGGCCCTTGGAATGGCACTCCTGACCGCCAGTAGATTTTGGGCGTTAGCAACAGCCTCCTTGGCATTGATATTTACAGAGGGAGATACTCCACTCACTTCCCAGCTTTGGCCTGTTATTGGGTTCACTGACCtggccactggaattgtgatgtaGAAACCAGAATCTCCTATTCTTATCTTCTCCACTTTCACTGACCCCCCGGCTGACCTCTCTCCAACAATGTTCGCCCTCTTCAAATGCTTCAGAGTGTAGGCGACTGCCTCAGCCGCACCCATAGTACGCTTACTGGTTAATACGATGAGGTCTTTTCGCTTTCCGTACCGCTCTCCCATGATAGATGACATAGTCCACAGCTCCTTAGTGGTGTTGGAGGGTCGATCGAACACAGTGTCAATGTGAATGAGAGGTTCTGGGTCGGAGAAGTAGGAGATGATGAACGGGACTCCGGACAGCTCCCCAGCTGTGCTGTAGCGCAGGTCAAAGATTAACGAGGAGGTGTTGGCAACCTTGTTCCAGACGTTGTCCCGGAGCAGCGGGCCAAGCTTGGCGGCCGTCTCCTCCCCTATGATCTGGTCGATCCTCAGGTAACCCACGTTATTCTCCAGGACCTCCAGCTTCACAGAGTTCCTGACCAGACGGATGAGCTGCTCagtggggagagaagggagggcgGGCGGCATCACTGGGACAAAGTTTGGCTCGAAGGACACAGTTAGTCGAGGGTCATTGAGTGCACCCTGCACGCCAACTGTCAGCACAGATGCCAAGGTCTTGCGGTCAGATATTTTGAGGATTTCTCCACTGTTGATGGCTTGCTGAATGGCCTCCTGCATGCCGACCAGATTCTCAGGGAAGCAGTAGTTGTCGAGTAGAATTTTTGCcatgtccagcaccagagccggcTGGAAGGAAGAGCTGCCAAAGAGAACATGGCAAAGAAGCACCAGCAGTGCTGGTGAGAACCGACCTCCTGCCATTACTGCGGAGAATGTTATATTTTATCTGTGTTGTCCTGCTTTTTTTCTCCATTCATTCAGAGGGGCGGTCTTTTGTTAAGAGAGAATGTTTTAACCACCAGGTTTCGGACAGCAACAATGACGTAAGAGGCTTTTGTTCCCAATAAACCTTTAATCGTATTATCTGAGGTGCATCCGCCAGACAGTAACAGATGAAAATGTTTAACTGGAGATGTTACATCAAAGGTATTATAATGTACATATTTGGCCACAGGATTATTGGAGTTTCCCTTTCTTCCACTTGCtttatttcatttgttttattaCTGTGAATGTTTCTGTGTGGATGTACAGTATTTCGTTTTAGGCATCAAATACGAAACCTTTGCATTCCATATTATTTTTGGGGAATTTCTATGATTTGCACTATCATGTCATACTCATTTTCTTGAAAAAAAAGGGATGAGATATGACAAGAGATTAGGTCAGATTAAAGAAGTGAAAGACAACCGGATTAGTGTGAAAGCCCCATGTGAAAGTCACAATCACTTATGAAAGCATTGTGGTTTGGCCAGATGGAGAATAGGGCCATGCTTTGTGAGGCCATGTCTGGGGCGCGGAGTGGATGACACGATTACACAGTTTGTGTTCACGTGTGTATTCCTGATACGCTGCCTTAAACACAGAATGCAGGATGGAAACTGAAGATTCAACAGCAATGATTATAAAAATGAACATGAATTACCATTTGTTTGAAAATACTTATATATTCACTATTTACAATGCATGTTTGCATCCAGATTTTCACTCACTGCACTCACTGTTAATTTGTCAAGGCTGAATAGAATTTAGGGTTGAGTGAGTTCAAAACTGAAATTTATCACTTGGAATTTGTACAACACAGAATTACGCAACTACATATTGTCTAATGCTGCAGCACGGTGTGTACCGTTAATCTTGCCTTAACTTCTAATACCCATTCTTACATAAGCCCGTCTGGC

Function

NR:

description
retinol-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1537796 True 4529 TUCP 0.46 2 15280053 15367456

Neighbor

gene id symbol gene type direction distance location
LOC110491432 LOC106589354 coding upstream 6810 15262299 ~ 15274695 (+)
get4 LOC100136505 coding upstream 26477 15248763 ~ 15253576 (+)
LOC110491423 NA coding upstream 43913 15223718 ~ 15236140 (+)
LOC110491425 LOC106578992 coding upstream 88341 15176730 ~ 15191712 (+)
htra1b LOC106578991 coding upstream 113893 15131882 ~ 15166160 (+)
LOC110491440 LOC106579004 coding downstream 95711 15463167 ~ 15481850 (+)
LOC110491443 LOC106579007 coding downstream 212512 15579968 ~ 15591060 (+)
sox9 sox9 coding downstream 515322 15882778 ~ 15886679 (+)
LOC110491447 sstr5 coding downstream 814335 16181791 ~ 16210927 (+)
LOC110491448 LOC106579011 coding downstream 819405 16186861 ~ 16191426 (+)
G1345046 NA non-coding upstream 70753 15209023 ~ 15209300 (+)
G1344991 cssa19h10orf88 non-coding upstream 104820 15172138 ~ 15175233 (+)
G1344987 NA non-coding upstream 178482 15096264 ~ 15101571 (+)
G1345134 LOC106579000 non-coding downstream 10746 15378202 ~ 15378678 (+)
G1345136 NA non-coding downstream 16376 15383832 ~ 15384116 (+)
G1345165 NA non-coding downstream 94948 15462404 ~ 15462716 (+)
G1345166 NA non-coding downstream 99712 15467168 ~ 15470469 (+)
G1345085 NA non-coding downstream 114511 15481967 ~ 15482649 (+)
LOC110491400 NA other upstream 1521721 13753527 ~ 13758332 (+)
G1342713 LOC106578962 other upstream 1686425 13591288 ~ 13636378 (+)
G1342581 NA other upstream 1998234 13281441 ~ 13281819 (+)
G1341820 NA other upstream 2810932 12467440 ~ 12469121 (+)
G1345170 NA other downstream 115691 15483147 ~ 15483513 (+)
G1345417 LOC106579048 other downstream 156546 15524002 ~ 15524568 (+)
G1345431 NA other downstream 174935 15542391 ~ 15543537 (+)
G1346758 NA other downstream 1578472 16945928 ~ 16946244 (+)
LOC110491464 LOC106579031 other downstream 1787998 17152137 ~ 17156699 (+)

Expression


Co-expression Network