XLOC_032986 (her6)


Basic Information

Item Value
gene id XLOC_032986
gene name her6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36551083 ~ 36552844 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064098
GAAAGTTACTGTGGGAAAGAAAGTTTGGGAAGTTTCACACGAGCCGTTCGCGTGCAGCCGGAGATATAAATAAGACCAACACGACGCTGAGGCAGGCAGTTGCTACGACCGCTGGCGAACGGTGAAATCAGAGACTGTGACATCATTGCCGCACCAGTTGAACTCGGGACACTTCGTGCGGATATCCATTCATAACTGGAACTGTATCAGCGTACTTGACAGCGTTTACTCCACTAGAAGCAGCTGTGCGGGAGGATTTCTTTTTATAAACAAGATCACGAAAGGATACTTCCCAGAGAAGATGCCTGCCGATATCATGGAAAAAAACTCCTCTTCTCCGGTCGCCGCGACTCCGGCGAGCATGAACACTACACCTGATAAACCCAAAACGGCTTCGGAACACAGAAAGtcTTCTAAACCCATTATGGAGAAAAGAAGAAGAGCGAGAATCAACGAAAGCTTGGGTCAGCTGAAAACGTTAATCTTGGATGCTCTGAAAAAAGATAGCTCCAGACACTCTAAACTTGAGAAAGCCGACATCCTGGAGATGACAGTGAAACATCTCAGAAACATGCAGCGCGCACAAATGACCGCTGCCCTAAACACAGATCCCACCGTTCTTGGGAAGTACCGAGCTGGATTCAGTGAATGCATGAACGAGGTTACCCGGTTCCTGTCCACATGTGAAGGGGTTAACACCGAGGTCAGGACTAGGCTGCTAGGTCACCTAGCCAGCTGCATGACACAGATCAACGCCATGAACTATCCAACACAGCACCAGATACCTGCCGGGCCTCCTCATCCATCCTTCAGTCAACCCATGGTTCAGATCCCCAGCGCGACTCAGCAAGCCAACGTTGTGCCTCTTAGCGGAGTCCCCTGCAAAAGCGGCTCATCCTCCAACTTGACTTCTGACGCAACTAAAGTATATGGGGGTTTCCAGCTTGTGCCGGCAACCGACGGACAGTTCGCCTTTTTGATTCCCAACGCTGCCTTTGCTCCAAACGGCCCTGTTATTCCAGTCTACGCAAACAATTCCAACACACCGGTTCCGGTGGCCGTTTCTCCGGGAGCACCGTCCGTCACGTCAGACTCCGTTTGGCGGCCTTGGTAGACTccgaggagaaaaaaaaactcttaaaagactcttaaaaaacaaatgacacttgtttTCTTTGTTCAGCGTtactttttttgtgctttttgtataaagagattgtgttggttttatgAGATGATGCACTATATTTGTATAGATCAAAAGGCAGAGAAGTTCATATTgaaataagttttgtattgttgAATTCCGTtcaatgcatttttatatttgcgGTATCTTTTCCACGTTGTGATGCCAAAGATATGTTGAATGCGCTTTCAAGTTTCTTCTTTTTGGAAgacaaataaatgacatttgaaaTGAAAA
>TCONS_00064099
AGTTGCTACGACCGCTGGCGAACGGTGAAATCAGAGACTGTGACATCATTGCCGCACCAGTTGAACTCGGGACACTTCGTGCGGATATCCATTCATAACTGGAACTGTATCAGCGTACTTGACAGCGTTTACTCCACTAGAAGCAGCTGTGCGGGAGGATTTCTTTTTATAAACAAGATCACGAAAGGATACTTCCCAGAGAAGATGCCTGCCGATATCATGGAAAAAAACTCCTCTTCTCCGGTCGCCGCGACTCCGGCGAGCATGAACACTACACCTGATAAACCCAAAACGGCTTCGGAACACAGAAAGtcTTCTAAACCCATTATGGAGAAAAGAAGAAGAGCGAGAATCAACGAAAGCTTGGGTCAGCTGAAAACGTTAATCTTGGATGCTCTGAAAAAAGATGTAAGTACCGAAAGTCCGACTGAGTCTTTCAGTTAGGCTATATCTGGCTGGAATATTAATGCATTTCTTTATATAGCCGCATATCTAAATCAGTCTCTTTCTTCACTCTCAGAGCTCCAGACACTCTAAACTTGAGAAAGCCGACATCCTGGAGATGACAGTGAAACATCTCAGAAACATGCAGCGCGCACAAATGACCGCTGCCCTAAACACAGATCCCACCGTTCTTGGGAAGTACCGAGCTGGATTCAGTGAATGCATGAACGAGGTTACCCGGTTCCTGTCCACATGTGAAGGGGTTAACACCGAGGTCAGGACTAGGCTGCTAGGTCACCTAGCCAGCTGCATGACACAGATCAACGCCATGAACTATCCAACAC

Function

symbol description
her6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including Notch signaling pathway; nervous system development; and somite specification. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; mesoderm; nervous system; neuronal stem cell; and pectoral fin. Orthologous to human HES1 (hes family bHLH transcription factor 1).

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001757 somite specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-144 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including Notch signaling pathway; nervous system development; and somite specification. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; mesoderm; nervous system; neuronal stem cell; and pectoral fin. Orthologous to human HES1 (hes family bHLH transcription factor 1).

Ensembl:

ensembl_id ENSDARG00000006514

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064098 False 1426 mRNA 0.47 4 36551083 36552844
TCONS_00064099 True 788 lncRNA 0.47 3 36551736 36552747

Neighbor

gene id symbol gene type direction distance location
XLOC_032985 BX950188.3 coding downstream 48753 36479193 ~ 36502330 (-)
XLOC_032984 NA coding downstream 157588 36386292 ~ 36393495 (-)
XLOC_032983 BX936433.2 coding downstream 260458 36287538 ~ 36290625 (-)
XLOC_032982 brinp3a.2 coding downstream 353031 36127505 ~ 36198052 (-)
XLOC_032981 NA coding downstream 426193 36121319 ~ 36124890 (-)
XLOC_032987 NA coding upstream 68466 36621310 ~ 36628097 (-)
XLOC_032988 opa1 coding upstream 165141 36717985 ~ 36795219 (-)
XLOC_032989 CT033823.1 coding upstream 180865 36733709 ~ 36733826 (-)
XLOC_032990 CT033823.3 coding upstream 191290 36744134 ~ 36744251 (-)
XLOC_032991 CT033823.2 coding upstream 217095 36769939 ~ 36770069 (-)
XLOC_032980 CU137680.2 non-coding downstream 636370 35910498 ~ 35914713 (-)
XLOC_032992 NA non-coding upstream 789484 37342328 ~ 37344594 (-)

Expression


Co-expression Network