XLOC_032995 (nit2)


Basic Information

Item Value
gene id XLOC_032995
gene name nit2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37431169 ~ 37441520 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064110
GCACAACTTACTGTTCAGAACAGTATAACAATGTCTGGTATCGTTAAGGCAATGTCGAAGTTTCGACTGGCTGTGGTGCAGTTGCATGTGTCAAAGATTAAAGCAGACAATTTAGGAAGAGCACAAACACTTGTGACGGAGGCTGCAGGACAAGGTGCaaaagttgttgttttaccaGAGTGCTTCAACTCGCCTTATGGAACTGGGTTTTTTAAAGAGTATGCTGAGAAAATTCCTGGAGAGTCCACGCAGGTGTTGTCAGAGACCGCCAAAAAGTGTGGGATCTATTTAGTTGGTGGTTCCATTCCAGAGGAGGATGGAGGGAAGCTCTACAACACCTGCTCGGTTTTTGGACCTGATGGAAAGCTGCTTGTCACACACAGAAAAATTCATCTCTTTGATATCGACGTACCAGGAAAAATACGATTTCAGGAGTCTGAAACACTAAGTCCAGGCAAAAGTTTATCTATGTTTGAGACCCCATATTGTAAAGTAGGTGTGGGAATTTGTTATGACATCCGGTTTGCAGAGCTTGCACAAATCTATGCTAAGAAAGGTTGCCAGCTTTTGGTGTATCCTGGTGCTTTCAATATGACCACAGGTCCTGCTCACTGGGAGCTGCTGCAGAGGGGGAGGGCAGTAGATAATCAAGTCTATGTGGCCACTGCTTCACCTGCAAGAGATGAGACAGCCAGCTATGTGGCTTGGGGTCACAGTTCTGTGATAAACCCTTGGGGGGAAGTAATTAGCAAAGCCGGATCAGAGGAATCTGTTGTTTATGCTGACATAGACCTGCAGTATTTGGCTGATGTGCGTCAACAGATCCCCATCACCAAACAGCGACGGAATGATCTATATAGTGTTAACAGTGTTCAGGAGGGCTGAATGCTTGAAAAGAGGAGGCACTGCAGCGAACATTAAGTCTTGATTCAAGGCAGACTCAGTCAGCACTTTGTGTTGGACACAAGCTCTAATGTAGGGAATCACACAAATAAGATTTTACAATTACTGGGAACAACCAAGTGCTGCACTCTTACTGATTTTCTTGCTGATCATTTCATTGGGAATTAAATTTGGAATATATAAAAGAggtcattatattttatatactttcTTTGATACTTTAACATATTAATATAGTGGTGCAAACATTGGACATGATATTTTTGAGCTGGTGTATTGCTCCATCATCATGAGAGTAACATAAAGCAGGGTATTTTCAAATCAGAATAATTGGCCTTAATGTTGTCATTGAATTCAATTCCAAATTGACAATTAAAATATAGTCTGACTCTGGAA

Function

symbol description
nit2 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

GO:

id name namespace
GO:0006107 oxaloacetate metabolic process biological_process
GO:0006528 asparagine metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0050152 omega-amidase activity molecular_function

KEGG:

id description
ko00250 Alanine, aspartate and glutamate metabolism

ZFIN:

id description
ZDB-GENE-050522-65 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

Ensembl:

ensembl_id ENSDARG00000017590

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064110 True 1299 mRNA 0.42 10 37431169 37441520

Neighbor

gene id symbol gene type direction distance location
XLOC_032994 cth coding downstream 8328 37409558 ~ 37422841 (-)
XLOC_032993 cthl coding downstream 27725 37389683 ~ 37403444 (-)
XLOC_032992 NA coding downstream 86575 37342328 ~ 37344594 (-)
XLOC_032991 CT033823.2 coding downstream 661100 36769939 ~ 36770069 (-)
XLOC_032990 CT033823.3 coding downstream 686918 36744134 ~ 36744251 (-)
XLOC_032997 BX324166.3 coding upstream 5508 37447028 ~ 37447143 (-)
XLOC_032998 si:dkey-66a8.7 coding upstream 9821 37451341 ~ 37460178 (-)
XLOC_032999 plcxd1 coding upstream 18749 37460269 ~ 37469775 (-)
XLOC_033000 jade3 coding upstream 37245 37478765 ~ 37513133 (-)
XLOC_033001 rp2 coding upstream 72391 37513911 ~ 37525879 (-)
XLOC_032989 CT033823.1 non-coding downstream 697343 36733709 ~ 36733826 (-)
XLOC_032987 NA non-coding downstream 803072 36621310 ~ 36628097 (-)
XLOC_033003 BX322552.1 non-coding upstream 173846 37615366 ~ 37615483 (-)
XLOC_033006 CR407584.1 non-coding upstream 690991 38132511 ~ 38358080 (-)
XLOC_033008 CR628341.2 non-coding upstream 1156149 38597669 ~ 38597784 (-)
XLOC_033009 NA non-coding upstream 1318026 38759546 ~ 38764326 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_08020667_08025048 NIT2 coding CI01000340 null 8020455 ~ 8025048 (-)