XLOC_033009


Basic Information

Item Value
gene id XLOC_033009
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38759546 ~ 38764326 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065197
AAGCTCAGGCAGAACATCAGAACAAGTCTggattttcctTCCAGGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATTGCTAAGACAACAGTGACCAGAGTTCTTTGACATACCCAATTAGCACTCTTCATAGAGAGACAGGTGTTTGCTGAGTTTAATAAAATCGCCAGTAAGAATCTTGAGAGAGACTTCTTTGAGGCTCTGGACCAGGATGCCCCACGGTTCATTGaacttttcaaaacaaaaaagggGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATTACAACAGAGCGAAGTACTGTGACGTTTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACCTGCTCTGATAAAGAGAGAGACGAGGCCCTAGAATGCATCACTGTTGGTGTGCTGACAGTTGTCAGTGAAGATAGTCCTCACAAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGGTGTTGTCATGGATCATATTAAAAACTTGCCTCAGGCAGTTTGTCTTTTGTTTGGTCTTTCATATGCATTGCATTTGGATTACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTGGTAAAGAAAAactttccaccaaaactgttaaCTCTGAAGGACAATCTTCTGGGTTAGAACAGTAAAGAGCATCTCAGTAAAGAGTCATCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATCAGAGAAAGTTTGATGCTTTTTTTCCCATTTACGTTCTCAATGGAAAAAAAGAATATTCCATTAAAGTCTACCATGTTATGCAGGTATGCTAATGGTGGAAATAGTGCCACGTTGTGTTGCAATGAGTTGTTAGTTGTTATTAGATGATAATGTCAGAAAAAAACCTAGCAAGGTTATCCTGTTTACATTTGTGTTTTGGGAAAActtttaatgatgtttttatttgtgttggtTTAATCCTTGGACTGCTCACTTTGGGACACAAAAGTATTTGTTGTACTTTCGGTTTTGATCAGAAATGCACTGATTTTGCATGCACTGAAGTCGTCCTGTAGTTAACAGTTTAATATTGGGAGACATGCATACAATTAGCTCAcagaaatgtttttatgttatttttttaaatatttttccttgtcattttatacagttaaatcAAACCACAACTTTGTTGTTTAGCTGCTGTTTTGTACTTGAATGTGCATTTAATAAATTTTGTAATGGAGCTGAATCAAA
>TCONS_00065198
CCGACCAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCGTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTAATTGGCACACTCATTTGtttcctTCCAGGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATTGCTAAGACAACAGTGACCAGAGTTCTTTGACATACCCAATTAGCACTCTTCATAGAGAGACAGGTAAGCAATTTTTGTTCTCaatcaataaaataatgcaaataaacataaattcaaGGTGTGTGACTAGAAATCCAAACACTTGTTGGAATGTTAATCCCTCTGCCACCTCTCCATCCCTACCCACTCCTCTCTACTTTTTCAGGTGTTTGCTGAGTTTAATAAAATCGCCAGTAAGAATCTTGAGAGAGACTTCTTTGAGGCTCTGGACCAGGATGCCCCACGGTTCATTGaacttttcaaaacaaaaaagggGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATTGTAAGTAGGTTTATTTTGCTTTTGATCTGTGTGATAGTTCATCAATCAAGTTCTAAATGAGACCATCCAGACCAacctattttatttcctgtctgctTGTGCCTTGCAAATTACTCTGTTAACTGGTattttctctctctgtgtatcATTAGACAACAGAGCGAAGTACTGTGACGTTTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACCTGCTCTGTAAGTACTTgcacataagaaaaagtttggtctTGTAGAACACTTAGAATTGAAGACAAGGAGACTTGGTTCTTTCTTCAGCAGGATTCTTTATTGAGAACATGAGCTGCTGCAGTCAAGTCTGATCAAGGCACAACAAAAGGGTTAAATATATCATATCATTTTATTGACAAGTACACATTTCCATTGCCAACACTTAGTGTCAGATAACTTAAAGACATTGCTATTGCTACAGTTTCTATGACTGCTCCACAGATTTCTTGTTGCAAATtttacacacgcacgcacgcacacgcacacacacacacacacacacacacacaacaacctgGAGGTGGACACacccacacaccacacacacacacaatttaactGACACACTCTAACacaggctcacacacactcacacattcagaaagactcacacacacagattcaaacacagacacacactcacacacactcaaacacagactcagacaaacacacacacacttaaacacaggctcacacacactcacacatttaaaaagactCACACACAGGTTCAAACACAgactcagacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactttaccaaaataaaagaggaattaaaatgaaaactaaaatttataattttaatttgagTTGTCACTATTATTGCGTGAGCGTTAATAAAGAGCTTTTGTAAAACTATTTGTAGTTTCTTTTTCACgtttggcttttcattttaatattggctGTCTTGCCTCGAGACTGTagtgaaaatgaaatgtaaaatcaccaattgcattttatttttcaatttgacAGGGATGATGCACCGTCACCATGAGAATGAAATCATTTCATTCTCAATTTTGTCACACATTTTGCATACAGTTTTCTCTAATGAAATCGTTAATCtggttttaattttcattttagtcatttaatttatttaaatttggcaGAAAATGTCTTCCATAGATCTTAAACATATTCTTAAATTTGTAATCCTACAGTCTGCATGAACATAAAACTATACCTGCGTTGACATAGATGTAATTCCATCTGTTCAATATACAATATGCATTTTGTACAGTGATTGATGTATTTTGTAGGTTGAAAAGTCAGTGTCACTCTTTGAGGATGTATAGACCTTTTTAGCTTTAGTTTAAccataacaaatatatttttgtttgctttattgttaCGATCCAGtgtgaaaacatatttaaaaccaTATTCTCTGATAACATTACAACACTAAAAAAGAATGTTTTAGAATAGCATAAATTGCAATGCTGAAGAATGTGTGTCTTTTAGGATAAAGAGAGAGACGAGGCCCTAGAATGCATCACTGTTGGTGTGCTGACAGTTGTCAGTGAAGATAGTCCTCACAAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGGTGTTGTCATGGATCATATTAAAAACTTGCCTCAGGCAGTTTGTCTTTTGTTTGGTCTTTCATATGCATTGCATTTGGATTACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTGGTAAAGAAAAactttccaccaaaactgttaaCTCTGAAGGACAATCTTCTGGGTTAGAACAGTAAAGAGCATCTCAGTAAAGAGTCATCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATCAGAGAAAGTTTGATGCTTTTTTTCCCATTTACGTTCTCAATGGAAAAAAAGAATATTCCATTAAAGTCTACCATGTTATGCAGGTATGCTAATGGTGGAAATAGTGCCACGTTGTGTTGCAATGAGTTGTTAGTTGTTATTAGATGATAATGTCAGAAAAAAACCTAGCAAGGTTATCCTGTTTACATTTGTGTTTTGGGAAAActtttaatgatgtttttatttgtgttggtTTAATCCTTGGACTGCTCACTTTGGGACACAAAAGTATTTGTTGTACTTTCGGTTTTGATCAGAAATGCACTGATTTTGCATGCACTGAAGTCGTCCTGTAGTTAACAGTTTAATATTGGGAGACATGCATACAATTAGCTCAcagaaatgtttttatgttatttttttaaatatttttccttgtcattttatacagttaaatcAAACCACAACTTTGTTGTTTAGCTGCTGTTTTGTACTTGAATGTGCATTTAATAAATTTTGTAATGGAGCTGAATCAAA
>TCONS_00065199
GACCGACCAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCGTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTAATTGGCACACTCATTTGtttcctTCCAGGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATTGCTAAGACAACAGTGACCAGAGTTCTTTGACATACCCAATTAGCACTCTTCATAGAGAGACAGGTGTTTGCTGAGTTTAATAAAATCGCCAGTAAGAATCTTGAGAGAGACTTCTTTGAGGCTCTGGACCAGGATGCCCCACGGTTCATTGaacttttcaaaacaaaaaagggGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATTACAACAGAGCGAAGTACTGTGACGTTTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACCTGCTCTGATAAAGAGAGAGACGAGGCCCTAGAATGCATCACTGTTGGTGTGCTGACAGTTGTCAGTGAAGATAGTCCTCACAAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGGTGTTGTCATGGATCATATTAAAAACTTGCCTCAGGCAGTTTGTCTTTTGTTTGGTCTTTCATATGCATTGCATTTGGATTACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTGGTAAAGAAAAactttccaccaaaactgttaaCTCTGAAGGACAATCTTCTGGGTTAGAACAGTAAAGAGCATCTCAGTAAAGAGTCATCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATCAGAGAAAGTTTGATGCTTTTTTTCCCATTTACGTTCTCAATGGAAAAAAAGAATATTCCATTAAAGTCTACCATGTTATGCAGGTATGCTAATGGTGGAAATAGTGCCACGTTGTGTTGCAATGAGTTGTTAGTTGTTATTAGATGATAATGTCAGAAAAAAACCTAGCAAGGTTATCCTGTTTACATTTGTGTTTTGGGAAAActtttaatgatgtttttatttgtgttggtTTAATCCTTGGACTGCTCACTTTGGGACACAAAAGTATTTGTTGTACTTTCGGTTTTGATCAGAAATGCACTGATTTTGCATGCACTGAAGTCGTCCTGTAGTTAACAGTTTAATATTGGGAGACATGCATACAATTAGCTCAcagaaatgtttttatgttatttttttaaatatttttccttgtcattttatacagttaaatcAAACCACAACTTTGTTGTTTAGCTGCTGTTTTGTACTTGAATGTGCATTTAATAAATTTTGTAATGGAGCTGAATCAAA
>TCONS_00064136
GACCGACCAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCGTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTAATTGGCACACTCATTTGtttcctTCCAGGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATTGCTAAGACAACAGTGACCAGAGTTCTTTGACATACCCAATTAGCACTCTTCATAGAGAGACAGGTGTTTGCTGAGTTTAATAAAATCGCCAGTAAGAATCTTGAGAGAGACTTCTTTGAGGCTCTGGACCAGGATGCCCCACGGTTCATTGaacttttcaaaacaaaaaagggGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATTACAACAGAGCGAAGTACTGTGACGTTTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACCTGCTCTGATAAAGAGAGAGACGAGGCCCTAGAATGCATCACTGTTGGTGTGCTGACAGTTGTCAGTGAAGATAGTCCTCACAAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGGTGTTGTCATGGATCATATTAAAAACTTGCCTCAGGCAGTTTGTCTTTTGTTTGGTCTTTCATATGCATTGCATTTGGATTACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTGGTAAAGAAAAactttccaccaaaactgttaaCTCTGAAGGACAATCTTCTGGGTTAGAACAGTAAAGAGCATCTCAGTAAAGAGTCATCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATCAGAGAAAGTTTGATGCTTTTTTTCCCATTTACGTTCTCAATGGAAAAAAAGAATATTCCATTAAAGTCTACCATGTTATGCAGGTATGCTAATGGTGGAAATAGTGCCACGTTGTGTTGCAATGAGTTGTTAGTTGTTATTAGATGATAATGTCAGAAAAAAACCTAGCAAGGTTATCCTGTTTACATTTGTGTTTTGGGAAAActtttaatgatgtttttatttgtgttggtTTAATCCTTGGACTGCTCACTTTGGGACACAAAAGTATTTGTTGTACTTTCGACATGCATACAATTAGCTCAcagaaatgtttttatgttatttttttaaatatttttccttgtcattttatacagttaaatcAAACCACAACTTTGTTGTTTAGCTGCTGTTTTGTACTTGAATGTGCATTTAATAAATTTTGTAATGGAGCTGAATCAAA
>TCONS_00064137
AGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCGTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTAATTGGCACACTCATTTGtttcctTCCAGGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGATACTGTGGGTTCGATTTATAGTCCATTATACCCAGGACTACAGTTCCCTTGATGTCTAACCACATAAGCGAGTCATTTACCATTTACTTTTTGTACTGCTGTGTTCACTTGTCTTAAAGAAGTTCATTGATTTAAAAGCTTGATGATTAGATTTTTGCAAGGATTTAGTTTTTCCTATAGCTCTGGTATTTCAAATCTgatactgcattttagtgtttttgtctttttatgttGGTAGGTTTGATGCCAAAAtgatcttttctttcttttcagattttcaaacagtTATCAAAATGGA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043038 amino acid activation biological_process
GO:0043039 tRNA aminoacylation biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0140053 mitochondrial gene expression biological_process
GO:0006457 protein folding biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005761 mitochondrial ribosome cellular_component
GO:0000313 organellar ribosome cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005840 ribosome cellular_component
GO:0101031 chaperone complex cellular_component
GO:0016272 prefoldin complex cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0016875 ligase activity, forming carbon-oxygen bonds molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097018

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065197 False 1486 lncRNA 0.40 7 38759546 38763847
TCONS_00065198 False 3219 lncRNA 0.37 4 38759546 38764324
TCONS_00065199 False 1568 lncRNA 0.40 7 38759546 38764326
TCONS_00064136 False 1497 lncRNA 0.40 8 38759546 38764326
TCONS_00064137 True 463 lncRNA 0.36 3 38762774 38764318

Neighbor

gene id symbol gene type direction distance location
XLOC_033008 CR628341.2 coding downstream 161762 38597669 ~ 38597784 (-)
XLOC_033007 gabra5 coding downstream 332604 38366936 ~ 38426942 (-)
XLOC_033006 CR407584.1 coding downstream 401466 38132511 ~ 38358080 (-)
XLOC_033005 nipa1 coding downstream 1009835 37745719 ~ 37749711 (-)
XLOC_033004 nipa2 coding downstream 1014038 37733608 ~ 37745508 (-)
XLOC_033010 cnga3a coding upstream 27574 38791900 ~ 38818582 (-)
XLOC_033011 hdac7b coding upstream 140721 38905047 ~ 38930726 (-)
XLOC_033012 vdrb coding upstream 190407 38954733 ~ 39006449 (-)
XLOC_033013 tns2b coding upstream 247377 39011703 ~ 39037613 (-)
XLOC_033014 tns2b coding upstream 275154 39039480 ~ 39051319 (-)
XLOC_033003 BX322552.1 non-coding downstream 1144063 37615366 ~ 37615483 (-)
XLOC_032997 BX324166.3 non-coding downstream 1312403 37447028 ~ 37447143 (-)
XLOC_032996 BX324166.2 non-coding downstream 1320176 37439255 ~ 37439370 (-)
XLOC_033024 NA non-coding upstream 727520 39491846 ~ 39521832 (-)
XLOC_033025 CU467856.1 non-coding upstream 760598 39524924 ~ 39525505 (-)
XLOC_033038 NA non-coding upstream 1274366 40038692 ~ 40044111 (-)
XLOC_033043 NA non-coding upstream 1408902 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 1619098 40383424 ~ 40409125 (-)

Expression


Co-expression Network