XLOC_033010 (cnga3a)


Basic Information

Item Value
gene id XLOC_033010
gene name cnga3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38791900 ~ 38818582 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064138
ATGGCGAAGATTTGTACAGAACAGTCCTACCCGTCACAACACAGGCTATCAGTTCGGGCCTCTGAAGATGAACCGGACCACACTGAAAATGGTGCAAGCAGgccTCATTCTCTATGTGACGACAACTCCTCTGACATTCAGGGGATTGTTTCCACTGAAGGCTCCAGTAGAAGCTCTTTCACAGGTGCTGGGGCAATGGCGAGGGTCACTCAGTTCGTGATAATGCTGAGGAACTGGGCCACACACAGGCTTCACAGAGAGGTTGAGCGTCCTGACTCCTTCTTAGAGCGCTTTCGTGGACCAGACCTCAAAGACATATCTAGCAGAGGGAGTAATGCCCGATCCTCTATAGAGAAGAAAGATGAGAAAAAGGATGAGAAAAAAGATGAAAAGGATGAGAAAAAGGATGAAAAGAAGGACGAGAAAAAAGATGAAAAGAAGGATGAAAAAAAGGACGAAAAGAAGGATGACAAGAAAGATGATAAAAAAGATGATAAAAAGAAAGATGAAGTGTGGATCATGGATCCGGCTTCAGACAAGTATTACAGATGGCTGTCCATCATTGCAGCTCCAGTGTTTTACAACCTGATGATGCTGGTGACGAGGGCCTGTTTCAACGAGCTTCAGAACACTTACACAATACTCTGGATAGTCCTGGACTACACTTCAGATGTTATCTACTACATGGACACGTTTGTCAGGTCCAGAACAGGTTTCTTGGAACAGGGTCTCCTTGTCAAGGACTCCAAAAAACTGATCAACAATTACAGGACAATCCCACAGTTCAAATACGACATGATCTCCATGATCCCCACAGATCTCTTTATGCTAAAAGTGGGATTCAATAACCCTGAACTTCGCTTTAACCGTCTCTTCAAAATGGCACGTCTCTTTGAGTTCTTCGACCGCACAGAAACCCGAACAAACTACCCCAACATTTTCCGCATCAGCAACCTCGTGCTTTACATCCTCGTCATCATCCACTGGAATGCTTGCATCTTCTTTGCCATTTCCAAAACCATCGGCTTTGGGACCGACACCTGGGTGTATCCCAACATCAGCCACCCTGAATATGGACGCCTGGCCAGAAAATACATCTATTGCCTGTACTGGTCCACTCTCACCCTCACCACCATCGGAGAAACGCCACCTCCAGTTAGAGACATTGAGTATCTATTTGTGGTTATGGACTTCCTAATCGGTGTGTTGATTTTCGCTACCATCGTCGGTAATGTCGGCGCCATGATCTCTAACATGAATGCATCCCGGGCTGAATTCCAAGCCAAGATCGACTCGATCAAGCAGTACATGCAGTTTCGTAAGGTCAGCAAAGACCTGGAGGCCCGAGTCATCAAATGGTTCGACTACCTCTGGACGGAGAAGAAGACCTGCGACGAGAAGGAGGTATTGAAGAATCTTCCAGACAAGCTCAAAGCAGAGATTGCCATCAACGTCCATCTGGACACCCTGAAGAAGGTGCGAATCTTCCAGGATTGCGAAGCCGGACTTCTGATTGAGTTGGTGTTGAAGCTGCAACCTCAAGTCTTCAGTCCTGGAGATTATATATGTAAAAAAGGCGACATCGGTCGAGAAATGTACATCATTAAAGAAGGAAAACTGGCTGTTGTGGCTGATGACGGCATCACACAGTTTGTAGTTCTCAGCGATGGCGCTTATTTTGGAGAAATCAGCATCCTTGGGATCAAAGGCAGTAAAGCTGGAAACAGAAGAACTGCGAATATTCGTAGTGTCGGCTACTCAGACCTCTTTGCTCTCTCAAAAGACGACCTGGTGGAAGCGCTTACTGAGTATCCAGACGCCAAAAAAGCCCTGGAGGAGAAAGGAAAGGCCATTTTAAGGAAGGATAATCTTCTGGACGAAGCAGTGGCGGCTGCAGGAGCTGATCCCAAAGATCTGGAGGAGAAGATTCACCGCCTCGAGGGAAACCTTGACATTATGACTGGCAAATTCGCCAAGCTGATGGCAGAGTACACGTCCTACCAGGGCAAGATCAAGCAGAGGATCACCAACATGGAGAATAAAGTGAAAACggtgttttccagtgatgggatgcagctggaagggcatccgctgtgtaaaacatatgctagataa
>TCONS_00064139
AAAGACTCTCGAATCGGAGCGCATCTTTTAGCAGTCTAATTTAAAACAAACTGGACATTTATGAGACACGAATCAGCCCAATCAAATAAAAGGATCAAAAAAGTGTGTAAACTGATGACCATGAAAGTAAACTCGAATTAATTCTGTGAAGATGGGATTTTACATCACGCTGAGCAGGATCACCAACTGCTTCATCCAAAGAGAGACTTGAACAGGAATTCAGCCTGTAGCTGCTGCCTAAATCTGTTGGACTACTGGATATTGTTGCTTCACAGTGCTGGATGCCTAAAATAGGCAAAGAGAGGAATAAGAATGGCGAAGATTTGTACAGAACAGTCCTACCCGTCACAACACAGGCTATCAGTTCGGGCCTCTGAAGATGAACCGGACCACACTGAAAATGGTGCAAGCAGgccTCATTCTCTATGTGACGACAACTCCTCTGACATTCAGGGGATTGTTTCCACTGAAGGCTCCAGTAGAAGCTCTTTCACAGGTGCTGGGGCAATGGCGAGAAAAGCCAATCCCTGGCCTCTGGCAGTTTACAATATGAACAACTGCAACAACACAGATGACAAAAAAGAGGACAAAAAGGAAGAGATAAAAAAAGACGGAGACAAAAAGGAAGAGAAAAAAGATGAGAAGGAAGAGAAGAAAGATGAGAAAAAGGATGAGAAAAAAGATGAAAAGGATGAGAAAAAGGATGAAAAGAAGGACGAGAAAAAAGATGAAAAGAAGGATGAAAAAAAGGACGAAAAGAAGGATGACAAGAAAGATGATAAAAAAGATGATAAAAAGAAAGATGCTCCTCCTCCACCGAAGGAAGTGTGGATCATGGATCCGGCTTCAGACAAGTATTACAGATGGCTGTCCATCATTGCAGCTCCAGTGTTTTACAACCTGATGATGCTGGTGACGAGGGCCTGTTTCAACGAGCTTCAGAACACTTACACAATACTCTGGATAGTCCTGGACTACACTTCAGATGTTATCTACTACATGGACACGTTTGTCAGGTCCAGAACAGGTTTCTTGGAACAGGGTCTCCTTGTCAAGGACTCCAAAAAACTGATCAACAATTACAGGACAATCCCACAGTTCAAATACGACATGATCTCCATGATCCCCACAGATCTCTTTATGCTAAAAGTGGGATTCAATAACCCTGAACTTCGCTTTAACCGTCTCTTCAAAATGGCACGTCTCTTTGAGTTCTTCGACCGCACAGAAACCCGAACAAACTACCCCAACATTTTCCGCATCAGCAACCTCGTGCTTTACATCCTCGTCATCATCCACTGGAATGCTTGCATCTTCTTTGCCATTTCCAAAACCATCGGCTTTGGGACCGACACCTGGGTGTATCCCAACATCAGCCACCCTGAATATGGACGCCTGGCCAGAAAATACATCTATTGCCTGTACTGGTCCACTCTCACCCTCACCACCATCGGAGAAACGCCACCTCCAGTTAGAGACATTGAGTATCTATTTGTGGTTATGGACTTCCTAATCGGTGTGTTGATTTTCGCTACCATCGTCGGTAATGTCGGCGCCATGATCTCTAACATGAATGCATCCCGGGCTGAATTCCAAGCCAAGATCGACTCGATCAAGCAGTACATGCAGTTTCGTAAGGTCAGCAAAGACCTGGAGGCCCGAGTCATCAAATGGTTCGACTACCTCTGGACGGAGAAGAAGACCTGCGACGAGAAGGAGGTATTGAAGAATCTTCCAGACAAGCTCAAAGCAGAGATTGCCATCAACGTCCATCTGGACACCCTGAAGAAGGTGCGAATCTTCCAGGATTGCGAAGCCGGACTTCTGATTGAGTTGGTGTTGAAGCTGCAACCTCAAGTCTTCAGTCCTGGAGATTATATATGTAAAAAAGGCGACATCGGTCGAGAAATGTACATCATTAAAGAAGGAAAACTGGCTGTTGTGGCTGATGACGGCATCACACAGTTTGTAGTTCTCAGCGATGGCGCTTATTTTGGAGAAATCAGCATCCTTGGGATCAAAGGCAGTAAAGCTGGAAACAGAAGAACTGCGAATATTCGTAGTGTCGGCTACTCAGACCTCTTTGCTCTCTCAAAAGACGACCTGGTGGAAGCGCTTACTGAGTATCCAGACGCCAAAAAAGCCCTGGAGGAGAAAGGAAAGGCCATTTTAAGGAAGGATAATCTTCTGGACGAAGCAGTGGCGGCTGCAGGAGCTGATCCCAAAGATCTGGAGGAGAAGATTCACCGCCTCGAGGGAAACCTTGACATTATGACTGGCAAATTCGCCAAGCTGATGGCAGAGTACACGTCCTACCAGGGCAAGATCAAGCAGAGGATCACCAACATGGAGAATAAAGTGAAAACGCTGCGGCCTGAAGACCTGTCTGAGGTGATCGAGGACAAAAAGGAAGAGGAGAAGAAGACTAAATAGTAATCCGCATAGACTTTGGGGTTTAACGGGTTTCCTATGTATGTACATGTACATTTCTACACATAGAATGTTACTTTGAAACTGTTTATACAGATCTATTTATACATTTGACATATGACAATGATGTATTAATTGCCATATAtttgtgttaaagggatagttcacccacattGCTGTCATCACTTACCCTTCACTTgttgcaaacctgtttgactttcctacttccgttgaacacaaaataatttattttggcgAAAGCTAAAAACTTtgaaccactgacttccataggatTGCTCTTTCCTACTTATAGAAGTTGAGAAATCACAGGTTTTCCATCTTCTTTAGTTTAAAGATTAAGGAGCCCCTATTAGCTA
>TCONS_00064140
ATGGCGAAGATTTGTACAGAACAGTCCTACCCGTCACAACACAGGCTATCAGTTCGGGCCTCTGAAGATGAACCGGACCACACTGAAAATGGTGCAAGCAGgccTCATTCTCTATGTGACGACAACTCCTCTGACATTCAGGGGATTGTTTCCACTGAAGGCTCCAGTAGAAGCTCTTTCACAGGTGCTGGGGCAATGGCGAGGGTCACTCAGTTCGTGATAATGCTGAGGAACTGGGCCACACACAGGCTTCACAGAGAGGTTGAGCGTCCTGACTCCTTCTTAGAGCGCTTTCGTGGACCAGACCTCAAAGACATATCTAGCAGAGGGAGTAATGCCCGATCCTCTATAGAGAAGAAAGATGAGAAAAAGGATGAGAAAAAAGATGAAAAGGATGAGAAAAAGGATGAAAAGAAGGACGAGAAAAAAGATGAAAAGAAGGATGAAAAAAAGGACGAAAAGAAGGATGACAAGAAAGATGATAAAAAAGATGATAAAAAGAAAGATGCTCCTCCTCCACCGAAGGAAGTGTGGATCATGGATCCGGCTTCAGACAAGTATTACAGATGGCTGTCCATCATTGCAGCTCCAGTGTTTTACAACCTGATGATGCTGGTGACGAGGGCCTGTTTCAACGAGCTTCAGAACACTTACACAATACTCTGGATAGTCCTGGACTACACTTCAGATGTTATCTACTACATGGACACGTTTGTCAGGTCCAGAACAGGTTTCTTGGAACAGGGTCTCCTTGTCAAGGACTCCAAAAAACTGATCAACAATTACAGGACAATCCCACAGTTCAAATACGACATGATCTCCATGATCCCCACAGATCTCTTTATGCTAAAAGTGGGATTCAATAACCCTGAACTTCGCTTTAACCGTCTCTTCAAAATGGCACGTCTCTTTGAGTTCTTCGACCGCACAGAAACCCGAACAAACTACCCCAACATTTTCCGCATCAGCAACCTCGTGCTTTACATCCTCGTCATCATCCACTGGAATGCTTGCATCTTCTTTGCCATTTCCAAAACCATCGGCTTTGGGACCGACACCTGGGTGTATCCCAACATCAGCCACCCTGAATATGGACGCCTGGCCAGAAAATACATCTATTGCCTGTACTGGTCCACTCTCACCCTCACCACCATCGGAGAAACGCCACCTCCAGTTAGAGACATTGAGTATCTATTTGTGGTTATGGACTTCCTAATCGGTGTGTTGATTTTCGCTACCATCGTCGGTAATGTCGGCGCCATGATCTCTAACATGAATGCATCCCGGGCTGAATTCCAAGCCAAGATCGACTCGATCAAGCAGTACATGCAGTTTCGTAAGGTCAGCAAAGACCTGGAGGCCCGAGTCATCAAATGGTTCGACTACCTCTGGACGGAGAAGAAGACCTGCGACGAGAAGGAGGTATTGAAGAATCTTCCAGACAAGCTCAAAGCAGAGATTGCCATCAACGTCCATCTGGACACCCTGAAGAAGGTGCGAATCTTCCAGGATTGCGAAGCCGGACTTCTGATTGAGTTGGTGTTGAAGCTGCAACCTCAAGTCTTCAGTCCTGGAGATTATATATGTAAAAAAGGCGACATCGGTCGAGAAATGTACATCATTAAAGAAGGAAAACTGGCTGTTGTGGCTGATGACGGCATCACACAGTTTGTAGTTCTCAGCGATGGCGCTTATTTTGGAGAAATCAGCATCCTTGGGATCAAAGGCAGTAAAGCTGGAAACAGAAGAACTGCGAATATTCGTAGTGTCGGCTACTCAGACCTCTTTGCTCTCTCAAAAGACGACCTGGTGGAAGCGCTTACTGAGTATCCAGACGCCAAAAAAGCCCTGGAGGAGAAAGGAAAGGCCATTTTAAGGAAGGATAATCTTCTGGACGAAGCAGTGGCGGCTGCAGGAGCTGATCCCAAAGATCTGGAGGAGAAGATTCACCGCCTCGAGGGAAACCTTGACATTATGACTGGCAAATTCGCCAAGCTGATGGCAGAGTACACGTCCTACCAGGGCAAGATCAAGCAGAGGATCACCAACATGGAGAATAAAGTGAAAACGCTGCGGCCTGAAGACCTGTCTGAGGTGATCGAGGACAAAAAGGAAGAGGAGAAGAAGACTAAATAG

Function

symbol description
cnga3a Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gonad; heart; and nervous system. Human ortholog(s) of this gene implicated in achromatopsia 2 and color blindness. Orthologous to human CNGA3 (cyclic nucleotide gated channel subunit alpha 3).

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0007601 visual perception biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005221 intracellular cyclic nucleotide activated cation channel activity molecular_function
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090611-2 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gonad; heart; and nervous system. Human ortholog(s) of this gene implicated in achromatopsia 2 and color blindness. Orthologous to human CNGA3 (cyclic nucleotide gated channel subunit alpha 3).

Ensembl:

ensembl_id ENSDARG00000070726

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064138 False 2115 mRNA 0.47 8 38791900 38816500
TCONS_00064139 False 2807 mRNA 0.44 8 38794951 38818582
TCONS_00064140 True 2136 mRNA 0.47 7 38795325 38816500

Neighbor

gene id symbol gene type direction distance location
XLOC_033009 NA coding downstream 27574 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 coding downstream 194116 38597669 ~ 38597784 (-)
XLOC_033007 gabra5 coding downstream 364958 38366936 ~ 38426942 (-)
XLOC_033006 CR407584.1 coding downstream 433820 38132511 ~ 38358080 (-)
XLOC_033005 nipa1 coding downstream 1042189 37745719 ~ 37749711 (-)
XLOC_033011 hdac7b coding upstream 86465 38905047 ~ 38930726 (-)
XLOC_033012 vdrb coding upstream 136151 38954733 ~ 39006449 (-)
XLOC_033013 tns2b coding upstream 193121 39011703 ~ 39037613 (-)
XLOC_033014 tns2b coding upstream 220898 39039480 ~ 39051319 (-)
XLOC_033015 eif4bb coding upstream 246242 39064824 ~ 39080701 (-)
XLOC_033003 BX322552.1 non-coding downstream 1176417 37615366 ~ 37615483 (-)
XLOC_032997 BX324166.3 non-coding downstream 1344757 37447028 ~ 37447143 (-)
XLOC_033024 NA non-coding upstream 673264 39491846 ~ 39521832 (-)
XLOC_033025 CU467856.1 non-coding upstream 706342 39524924 ~ 39525505 (-)
XLOC_033038 NA non-coding upstream 1220110 40038692 ~ 40044111 (-)
XLOC_033043 NA non-coding upstream 1354646 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 1564842 40383424 ~ 40409125 (-)

Expression


Co-expression Network