RNA id: TCONS_00064139


Basic Information

Item Value
RNA id TCONS_00064139
length 2807
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_033010
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38791900 ~ 38818582 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGACTCTCGAATCGGAGCGCATCTTTTAGCAGTCTAATTTAAAACAAACTGGACATTTATGAGACACGAATCAGCCCAATCAAATAAAAGGATCAAAAAAGTGTGTAAACTGATGACCATGAAAGTAAACTCGAATTAATTCTGTGAAGATGGGATTTTACATCACGCTGAGCAGGATCACCAACTGCTTCATCCAAAGAGAGACTTGAACAGGAATTCAGCCTGTAGCTGCTGCCTAAATCTGTTGGACTACTGGATATTGTTGCTTCACAGTGCTGGATGCCTAAAATAGGCAAAGAGAGGAATAAGAATGGCGAAGATTTGTACAGAACAGTCCTACCCGTCACAACACAGGCTATCAGTTCGGGCCTCTGAAGATGAACCGGACCACACTGAAAATGGTGCAAGCAGgccTCATTCTCTATGTGACGACAACTCCTCTGACATTCAGGGGATTGTTTCCACTGAAGGCTCCAGTAGAAGCTCTTTCACAGGTGCTGGGGCAATGGCGAGAAAAGCCAATCCCTGGCCTCTGGCAGTTTACAATATGAACAACTGCAACAACACAGATGACAAAAAAGAGGACAAAAAGGAAGAGATAAAAAAAGACGGAGACAAAAAGGAAGAGAAAAAAGATGAGAAGGAAGAGAAGAAAGATGAGAAAAAGGATGAGAAAAAAGATGAAAAGGATGAGAAAAAGGATGAAAAGAAGGACGAGAAAAAAGATGAAAAGAAGGATGAAAAAAAGGACGAAAAGAAGGATGACAAGAAAGATGATAAAAAAGATGATAAAAAGAAAGATGCTCCTCCTCCACCGAAGGAAGTGTGGATCATGGATCCGGCTTCAGACAAGTATTACAGATGGCTGTCCATCATTGCAGCTCCAGTGTTTTACAACCTGATGATGCTGGTGACGAGGGCCTGTTTCAACGAGCTTCAGAACACTTACACAATACTCTGGATAGTCCTGGACTACACTTCAGATGTTATCTACTACATGGACACGTTTGTCAGGTCCAGAACAGGTTTCTTGGAACAGGGTCTCCTTGTCAAGGACTCCAAAAAACTGATCAACAATTACAGGACAATCCCACAGTTCAAATACGACATGATCTCCATGATCCCCACAGATCTCTTTATGCTAAAAGTGGGATTCAATAACCCTGAACTTCGCTTTAACCGTCTCTTCAAAATGGCACGTCTCTTTGAGTTCTTCGACCGCACAGAAACCCGAACAAACTACCCCAACATTTTCCGCATCAGCAACCTCGTGCTTTACATCCTCGTCATCATCCACTGGAATGCTTGCATCTTCTTTGCCATTTCCAAAACCATCGGCTTTGGGACCGACACCTGGGTGTATCCCAACATCAGCCACCCTGAATATGGACGCCTGGCCAGAAAATACATCTATTGCCTGTACTGGTCCACTCTCACCCTCACCACCATCGGAGAAACGCCACCTCCAGTTAGAGACATTGAGTATCTATTTGTGGTTATGGACTTCCTAATCGGTGTGTTGATTTTCGCTACCATCGTCGGTAATGTCGGCGCCATGATCTCTAACATGAATGCATCCCGGGCTGAATTCCAAGCCAAGATCGACTCGATCAAGCAGTACATGCAGTTTCGTAAGGTCAGCAAAGACCTGGAGGCCCGAGTCATCAAATGGTTCGACTACCTCTGGACGGAGAAGAAGACCTGCGACGAGAAGGAGGTATTGAAGAATCTTCCAGACAAGCTCAAAGCAGAGATTGCCATCAACGTCCATCTGGACACCCTGAAGAAGGTGCGAATCTTCCAGGATTGCGAAGCCGGACTTCTGATTGAGTTGGTGTTGAAGCTGCAACCTCAAGTCTTCAGTCCTGGAGATTATATATGTAAAAAAGGCGACATCGGTCGAGAAATGTACATCATTAAAGAAGGAAAACTGGCTGTTGTGGCTGATGACGGCATCACACAGTTTGTAGTTCTCAGCGATGGCGCTTATTTTGGAGAAATCAGCATCCTTGGGATCAAAGGCAGTAAAGCTGGAAACAGAAGAACTGCGAATATTCGTAGTGTCGGCTACTCAGACCTCTTTGCTCTCTCAAAAGACGACCTGGTGGAAGCGCTTACTGAGTATCCAGACGCCAAAAAAGCCCTGGAGGAGAAAGGAAAGGCCATTTTAAGGAAGGATAATCTTCTGGACGAAGCAGTGGCGGCTGCAGGAGCTGATCCCAAAGATCTGGAGGAGAAGATTCACCGCCTCGAGGGAAACCTTGACATTATGACTGGCAAATTCGCCAAGCTGATGGCAGAGTACACGTCCTACCAGGGCAAGATCAAGCAGAGGATCACCAACATGGAGAATAAAGTGAAAACGCTGCGGCCTGAAGACCTGTCTGAGGTGATCGAGGACAAAAAGGAAGAGGAGAAGAAGACTAAATAGTAATCCGCATAGACTTTGGGGTTTAACGGGTTTCCTATGTATGTACATGTACATTTCTACACATAGAATGTTACTTTGAAACTGTTTATACAGATCTATTTATACATTTGACATATGACAATGATGTATTAATTGCCATATAtttgtgttaaagggatagttcacccacattGCTGTCATCACTTACCCTTCACTTgttgcaaacctgtttgactttcctacttccgttgaacacaaaataatttattttggcgAAAGCTAAAAACTTtgaaccactgacttccataggatTGCTCTTTCCTACTTATAGAAGTTGAGAAATCACAGGTTTTCCATCTTCTTTAGTTTAAAGATTAAGGAGCCCCTATTAGCTA

Function

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0007601 visual perception biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005221 intracellular cyclic nucleotide activated cation channel activity molecular_function
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090611-2 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gonad; heart; and nervous system. Human ortholog(s) of this gene implicated in achromatopsia 2 and color blindness. Orthologous to human CNGA3 (cyclic nucleotide gated channel subunit alpha 3).

Ensembl:

ensembl_id ENSDART00000149833

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065199 lncRNA downstream 30625 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064136 lncRNA downstream 30625 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00065198 lncRNA downstream 30627 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00064137 lncRNA downstream 30633 38762774 ~ 38764318 (-) True XLOC_033009
TCONS_00065197 lncRNA downstream 31104 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00064142 lncRNA upstream 88169 38906751 ~ 38908013 (-) True XLOC_033011
TCONS_00064153 lncRNA upstream 249502 39068084 ~ 39069770 (-) True XLOC_033015
TCONS_00064156 lncRNA upstream 332392 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064161 lncRNA upstream 390272 39208854 ~ 39218590 (-) False XLOC_033019
TCONS_00064163 lncRNA upstream 396619 39215201 ~ 39218590 (-) True XLOC_033019
TCONS_00064133 mRNA downstream 375633 38366936 ~ 38419318 (-) False XLOC_033007
TCONS_00064132 mRNA downstream 376089 38366936 ~ 38418862 (-) False XLOC_033007
TCONS_00064128 mRNA downstream 1045240 37745719 ~ 37749711 (-) False XLOC_033005
TCONS_00064127 mRNA downstream 1050521 37734450 ~ 37744430 (-) True XLOC_033004
TCONS_00064126 mRNA downstream 1051227 37734326 ~ 37743724 (-) False XLOC_033004
TCONS_00064141 mRNA upstream 86465 38905047 ~ 38930726 (-) False XLOC_033011
TCONS_00064143 mRNA upstream 136151 38954733 ~ 39006449 (-) False XLOC_033012
TCONS_00064144 mRNA upstream 136480 38955062 ~ 39005133 (-) False XLOC_033012
TCONS_00064145 mRNA upstream 158434 38977016 ~ 39005133 (-) True XLOC_033012
TCONS_00064146 mRNA upstream 193121 39011703 ~ 39024538 (-) False XLOC_033013
TCONS_00064135 other downstream 197167 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 368009 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 436871 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064130 other downstream 437238 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064123 other downstream 1179468 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064151 other upstream 246243 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064162 other upstream 394679 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064176 other upstream 706342 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 1274655 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 1355634 40174216 ~ 40182520 (-) True XLOC_033043

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08722460_08728762.mRNA True 4068 mRNA 0.39 6 CI01000340 8721652 ~ 8730006 (-)