RNA id: TCONS_00064162


Basic Information

Item Value
RNA id TCONS_00064162
length 834
RNA type processed_transcript
GC content 0.50
exon number 7
gene id XLOC_033019
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39202685 ~ 39218609 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAACGCTTGTTTGCGATATGAGAGAACTATGGCTTCCTCCTTGATTAAGTGATGGAAGATGTAATGTTGGTCTCTAACAAATACAAGCAGCTGTATGAGTGTCGTTTACCAGCTCAGGCAGTGCGTTTCCATCAGGACCCGGTGTCAGAGCCTGATGTGCAGGGTTACAGCGGCCCCGGGGTCCCTGAGCTCCTCAAGCCCATGCAGACGGCAGCATGTCTGATTAAGACCAAAGACTGGTGGACCTATGAGTTCTGCTACGGCCAGCACATCAGACAATACCACTTAGAAGATTCGGAGATCAAGGGAGATGTACTGTTTTTGGGATATTATGATACAGAGTTTGACTGGACGAATGAAACTGCAAAGgcATCTAAGCAGCATAAGCTGAAGAGGTATCACAGTCAGTCATATGTCAATGGCTCAAAATGTGACTTAAACGGCAGTCCCAGAGAGACGGAAGTCAGATTTGTGTGTGAGGAAGGCTCTACTGACTTCATTTCACGGGTGGATGAACCCCAGTCTTGCCGCTACGTCTTGACAGTCCACACCTCTCGCACGTGCCAGCATCCCCTTCTGCGCCCACCGTCCACTGCCAAACCACAAGGCATTGTGTGCCAACCTGCTCTCAGTGCCCAGCAGTACATGGACTACGTCAAGGCTCAAGTCTctGACACCAAACGTAAAGTGGAGCAGATCTCAGAGGAGCTCAGAAACCTGGATGAAATTCTGTCCAAGGATGACAAGAACAAAGGTGTGCTGGATGACAGAACAGATGAGGAACCTGCAGTTAGCTCTGATGAGCCTCCAGTTTCCAAGGCCCAAAAAAAAG

Function

GO:

id name namespace
GO:0030970 retrograde protein transport, ER to cytosol biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-060929-32 Predicted to be involved in retrograde protein transport, ER to cytosol and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human OS9 (OS9 endoplasmic reticulum lectin).

Ensembl:

ensembl_id ENSDART00000138171

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064156 lncRNA downstream 61772 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064153 lncRNA downstream 143491 39068084 ~ 39069770 (-) True XLOC_033015
TCONS_00064142 lncRNA downstream 305248 38906751 ~ 38908013 (-) True XLOC_033011
TCONS_00065199 lncRNA downstream 448935 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064136 lncRNA downstream 448935 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064172 lncRNA upstream 273256 39491846 ~ 39500044 (-) False XLOC_033024
TCONS_00064171 lncRNA upstream 273256 39491846 ~ 39500145 (-) False XLOC_033024
TCONS_00064173 lncRNA upstream 273256 39491846 ~ 39506586 (-) False XLOC_033024
TCONS_00065200 lncRNA upstream 275659 39494249 ~ 39500145 (-) False XLOC_033024
TCONS_00064185 lncRNA upstream 443425 39662015 ~ 39666518 (-) False XLOC_033029
TCONS_00064159 mRNA downstream 14191 39194620 ~ 39199070 (-) True XLOC_033018
TCONS_00064158 mRNA downstream 14349 39190402 ~ 39198912 (-) False XLOC_033018
TCONS_00064157 mRNA downstream 45529 39162294 ~ 39167732 (-) True XLOC_033017
TCONS_00064154 mRNA downstream 52839 39123544 ~ 39160422 (-) False XLOC_033016
TCONS_00064155 mRNA downstream 54308 39127298 ~ 39158953 (-) False XLOC_033016
TCONS_00064164 mRNA upstream 37580 39256170 ~ 39275915 (-) False XLOC_033020
TCONS_00064165 mRNA upstream 39970 39258560 ~ 39275793 (-) False XLOC_033020
TCONS_00064166 mRNA upstream 48456 39267046 ~ 39270851 (-) True XLOC_033020
TCONS_00064167 mRNA upstream 89908 39308498 ~ 39313027 (-) True XLOC_033021
TCONS_00064168 mRNA upstream 118141 39336731 ~ 39344259 (-) True XLOC_033022
TCONS_00064151 other downstream 144769 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064135 other downstream 615477 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 786319 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 855181 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064130 other downstream 855548 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064176 other upstream 306334 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 874647 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 955626 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064235 other upstream 1353956 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 1406714 40625304 ~ 40625420 (-) True XLOC_033055

Expression Profile

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