RNA id: TCONS_00064168


Basic Information

Item Value
RNA id TCONS_00064168
length 1917
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_033022
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39336731 ~ 39344259 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATATCTTGAAAATTGTTTCTTGACCAATAAGCTGGCCTTGAGCCACTCCCTGCACTCGATATAAGAGTTTGAAGGAACGTGTGTCGTCCCACCACTTTTGAGTTTCCATCCCCTCAACTCCTGGTCCTCTGACAGCTGTTTTGTCCAGAGATGCAGAGCTCGAAGAAAACTGTTAAGACTTTTAGCAGTCACTCCTCTGTTGGAGTGAGCAGCAACAGACGGACACCCCTGTCCCGTTCAGGGATGGTTTCGAGAGAAGGTTGGGGCTCCAGTCCAGTCCTTTACCCTTCGATTACAGCTGTAAAGGTCAACGAAAGTCTTCTGGCACCCCTAAACCTGGACATCGACCCGAGCATCCAGGCCATCAAGACTCAAGAGAAGGAACAGATCAAGACACTTAACAACCGCTTTGCTTCATTCATTGACAAAGTACGCTATCTAGAACAACAGAACAAGATGCTGGAAACTAAGTGGAGTGTCCTGCAGGAACAGACCAGTCGACAGTCCAACATTGATATGATGTTTGAGGGCTACATTGCTGGTCTGCGTAGACAGTTGGACAGTTTAGGTAATGAGAAGCAGCGCCTGGAGTCTGGCCTGCGAGACATGAACACACTCGTTGAAGACTTTAAGAGCAAGTATGAAGATGAAATTAATAAACGAAGCGATTCTGACAACGAATTTGTGCTTCTTAAAAAGAATGCTGATGATTCATACCTGAGTAAAGTGGAGCTGGATTGTAAATTGGATGCCCTTTCAGAGGAGATCAACTTCCTTTGGCAGATTTACGAGGCGGAACTCCATGAGCTCCAGACTCAGATCAAGGACACTTCAGTTGTTGTAGAAATGGACAACAGCAGGAATCTGGACATGGAATCTATCGTGGCTGAAGTTCGTGCTCAGTATGAGGAAATCGCCAGCCGCAGCCGTGCAGAAGCAGAGAGCTGGTACCAACAAAAGTATGAAGAAATGCAGTTGACCGCAACCAAACATGGAGATGACCTGAAAAACTCCAAGGCAGAAATCTCAGAGTACAACCGAAGAATTGCACGTATTCATTCTGAGATGGAGCTCATTAAGGGACAGTTCTCAAACCATGAAGCACAGATCAAAGAGGCAGAAGAACGTGGTGAACTGGCCGTGAAAGATGCCAGGCTGCGTCTGCAGGAGCTGGAAGCTGCTCTTCTGAGGGCTAAACAGGACATGGCCCGACAGGTGCGCGAGTACCAGTCACTGATGAACATCAAACTGGCTCTGGACATTGAGATCGCCACCTATAGGAAACTCCTGGAAGGGGAAGAAAGCAGACTGTATACATCATACCAGACACACTACATCACTAAACCAGGCCCACTCAACTACGATCTTGAAAGCAGCTTTGTAGGAGTATCATCCCAAAATGCCACAAAGGATATTCATAACACAGGCCTGGTTAAGCAGGAGGTGGTGGTTAATAAGGGTGGCAGCTCTAGCAGCCTTACCACCGTCACCAAAAGCACAAAGACCACTGTCGTCACCAGTGAGATGGGGAAGACTCTTGTGTCCACAGGGGGAAGTGTGCAGGTGATGGATAAATCTGCAGTCAAAGAACTGGAGGATGTTTTTAACTGATGGGAGGAAAGATTAAAGTGTATTGCACAGGATCCAGGATTAGATTTTTTATAGGTTGCCTTTCTCCCACTCAACAGTGAGCATGTCCAGTTTGTTGTTAAGGTTTGACATATAAAACTGATAACAAGACATACTAAAGATGTAgtatatttttaaagaatatctGATGTTTGCTTGTTTCCTTTGATTAAATGGTTACTAAATATCTGTTAATGAGAACAGTTAAACAAAAAGGGGGACACCGTTTGAGCACTTTTCTGACTATTAAGGACTGTATTCAAATAAAGTGCGTACCACAAATCAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0045095 keratin filament cellular_component
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-50 Predicted to be located in keratin filament. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT7 (keratin 7); KRT79 (keratin 79); and KRT8 (keratin 8).

Ensembl:

ensembl_id ENSDART00000104074

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064161 lncRNA downstream 118141 39208854 ~ 39218590 (-) False XLOC_033019
TCONS_00064163 lncRNA downstream 118141 39215201 ~ 39218590 (-) True XLOC_033019
TCONS_00064156 lncRNA downstream 185242 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064153 lncRNA downstream 266961 39068084 ~ 39069770 (-) True XLOC_033015
TCONS_00064142 lncRNA downstream 428718 38906751 ~ 38908013 (-) True XLOC_033011
TCONS_00064172 lncRNA upstream 147587 39491846 ~ 39500044 (-) False XLOC_033024
TCONS_00064171 lncRNA upstream 147587 39491846 ~ 39500145 (-) False XLOC_033024
TCONS_00064173 lncRNA upstream 147587 39491846 ~ 39506586 (-) False XLOC_033024
TCONS_00065200 lncRNA upstream 149990 39494249 ~ 39500145 (-) False XLOC_033024
TCONS_00064185 lncRNA upstream 317756 39662015 ~ 39666518 (-) False XLOC_033029
TCONS_00064167 mRNA downstream 23704 39308498 ~ 39313027 (-) True XLOC_033021
TCONS_00064164 mRNA downstream 60816 39256170 ~ 39275915 (-) False XLOC_033020
TCONS_00064165 mRNA downstream 60938 39258560 ~ 39275793 (-) False XLOC_033020
TCONS_00064166 mRNA downstream 65880 39267046 ~ 39270851 (-) True XLOC_033020
TCONS_00064160 mRNA downstream 118122 39202685 ~ 39218609 (-) False XLOC_033019
TCONS_00064169 mRNA upstream 48183 39392442 ~ 39475304 (-) False XLOC_033023
TCONS_00064170 mRNA upstream 48183 39392442 ~ 39489190 (-) True XLOC_033023
TCONS_00064174 mRNA upstream 161306 39505565 ~ 39518489 (-) False XLOC_033024
TCONS_00064175 mRNA upstream 165175 39509434 ~ 39521832 (-) True XLOC_033024
TCONS_00064177 mRNA upstream 186876 39531135 ~ 39605734 (-) False XLOC_033026
TCONS_00064162 other downstream 118141 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 268239 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064135 other downstream 738947 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 909789 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 978651 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064176 other upstream 180665 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 748978 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 829957 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064235 other upstream 1228287 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 1281045 40625304 ~ 40625420 (-) True XLOC_033055

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU562819 True 1894 TUCP 0.46 9 CI01000340 9038812 ~ 9043101 (+)