RNA id: TCONS_00064164


Basic Information

Item Value
RNA id TCONS_00064164
length 2240
RNA type mRNA
GC content 0.45
exon number 16
gene id XLOC_033020
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39256170 ~ 39275915 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAATGTGTGTCAGTGATTCAGAAAAAGCTGAGTGTGGATTAAACTGGACAGTACAGGACAGTAGAGAAGACAAAACACAACAATCAGCTATTTTCCGCCATTCATCTGGAGACAGAGAAAGATGAAGAGTTTGGCCAAACTTCAAGGCAACACAGAGCAACTTCTGATGTCTTTATCAAACACCCTCCCATCTTTGACCCTAAATAACCAGCAATGGATCCAGGAACAAAATGAAGGGTGTCTTTTACTGGAAGAAAAACAGGGTTGTTCAAAGAAGGGTGCAGGACCggaaaatgaaaaacaaagctGGAACCAAAGACTCGAACACATACCTGAGGACAAAGacTCGTACACGTTAACTGGGCTCAGTGATGTCTCCTTGCCTCCAGATGATCCTCCTTCAGCCTCTGTCTCCACTGATGACCTTTCTCCAATCTCTCCCAGCAACCATCAGCTTTTTTCCAGCAGACGAGCATCTGTCACATCCACCCGCTCCATCAAGGCCTTCAAGAGGTGGCTGAGCAGCCCGGTTCGAAGGCTGAGTTTGGGAGGAGGAAACAAGAGTCAGAGTTCAAAGGGAATTCAGAGCCCAGAAGGGTCAACCTACATGTTTCTTCCTCTCTCACCTGCTCAAAGCCCATTGAGCCCAATGGAGAAGTCCCAAAAACTGACCCGCTCCTACAGATCTCTGGACTGTGGTGAACTTTCTAGAGAAACATCTCCTGACAGTCCCTATTACCCAAGATACCTCAATGATCTCTTTCAGAGAAATCAGTCTTTTGATGTTCAAACTAGTGTCAGTCCATCTTTGACTGACAAAACACTTGTAGAACAATCGCAGAGCCTGGAGGACAATGAGCAACACAGAAGAACCGCTTTAGAAAAAAGCATATATGTGCTGACAGAGCTGGTAGAAACGGAGAAGCTGTATGTGGAAGATCTGGGGCTTGTTGTTGAGGGTTATATGCTTACAATGAGAAGTTTTGGAGTGCCCGAGTATTTGGAAGGAAAGGACAAAATAGTCTTTGGGAACATTCATCAGATCTACGACTGGCATAAAGACTATTTTCTTGGAGAGTTGGAGAAATGTGTGTCTGAACCCGACCTGCTAGCACAGCTGTTTATTAAACATGAGAGACGGCTCAACATGTATGTTGTCTACTGTCAGAACATGCCAAAGTCAGAGCACATCGTCTCAGAGTACATCGAAACTTATTTTGAGGATCTGAGGCAACAGCTGGGTCACAGACTGCAGTTAAATGACCTGCTCATCAAACCCGTTCAGAGAATCATGAAATATCAGCTGCTGCTGAAGGACTTCCTGAAGTACTACACTAAAGCGGGCAGACAAACAGAAGATCTTGAGAGGGCCGTTGAGGTCATGTGTTTTGTTCCAAAGCGATGCAATGACATGATGAATGTTGGACGACTGCAGGGTTTTGAGGGTCAGCTGAGAGCACAAGGGAAACTCCTGCAACAGGACACCTTCACATTCATTGAGAACGAGAACAGCATCCTCTCACGTCCCAAAGAGAGACGAGTGTTTCTTTTCGAGCAGCTCATCATCCTCAGTGAGCCAATGGACCGCAAGAGAGGCTTTTCCCTGCCAGGATACGTCTATAAAAACAGCATCAAGATCAGTTGTTTATCCATTGAGGATCGCTGCCCAGAAGACCCCTGTCGGCTGGTGCTGACATCTCGTAATATAGATGGAAGTTTGCAAAAATTCATTCTCCGTGCATCCTCCTCAGAGATCAGAACGTCCTGGGCAAACGACATCATACAGATGCTAGAGACACAGCGCAACTTTTTAAACGCCCTGCAGTCTCCTATCGAATTCCAGAGGAAAGAAATCAAATCCCTCAGTCTGGGAAAGAGCATGACAGCATCAGCCTCACTGAACTCTGGCCTGCGACCCTACAGCTCTGCTTCTATAGACCGTCAGACTCTGCCCTGCCTGCAGTCCTGGCATTCCTCACAACCCTCGACGCCTCCCTGAAAGCTTTCTGTTGGTCCTGCAGAGGCACTTTTTCATCTTCCTTCGCACTCAAGATAAAGCAAGACCATTTTACATTACCTGTGTCCAGAAAAAGACTGAATGGAGGAGGTTAAATTATTCATTTCTAATGATTTATAATGTGACTTAAAAGTTATACGATAATAAGTCATGTACTGTAAAGTTCAGGTATATGCATACATGAATTCTTGTAAAAAGAATTgttcttttcttctttcactc

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080225-17 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within regulation of Rho protein signal transduction. Is expressed in ball; epidermis; extension; median fin fold; and periderm. Orthologous to human ARHGEF25 (Rho guanine nucleotide exchange factor 25).

Ensembl:

ensembl_id ENSDART00000148531

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064161 lncRNA downstream 37580 39208854 ~ 39218590 (-) False XLOC_033019
TCONS_00064163 lncRNA downstream 37580 39215201 ~ 39218590 (-) True XLOC_033019
TCONS_00064156 lncRNA downstream 104681 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064153 lncRNA downstream 186400 39068084 ~ 39069770 (-) True XLOC_033015
TCONS_00064142 lncRNA downstream 348157 38906751 ~ 38908013 (-) True XLOC_033011
TCONS_00064172 lncRNA upstream 215931 39491846 ~ 39500044 (-) False XLOC_033024
TCONS_00064171 lncRNA upstream 215931 39491846 ~ 39500145 (-) False XLOC_033024
TCONS_00064173 lncRNA upstream 215931 39491846 ~ 39506586 (-) False XLOC_033024
TCONS_00065200 lncRNA upstream 218334 39494249 ~ 39500145 (-) False XLOC_033024
TCONS_00064185 lncRNA upstream 386100 39662015 ~ 39666518 (-) False XLOC_033029
TCONS_00064160 mRNA downstream 37561 39202685 ~ 39218609 (-) False XLOC_033019
TCONS_00064159 mRNA downstream 57100 39194620 ~ 39199070 (-) True XLOC_033018
TCONS_00064158 mRNA downstream 57258 39190402 ~ 39198912 (-) False XLOC_033018
TCONS_00064157 mRNA downstream 88438 39162294 ~ 39167732 (-) True XLOC_033017
TCONS_00064154 mRNA downstream 95748 39123544 ~ 39160422 (-) False XLOC_033016
TCONS_00064167 mRNA upstream 32583 39308498 ~ 39313027 (-) True XLOC_033021
TCONS_00064168 mRNA upstream 60816 39336731 ~ 39344259 (-) True XLOC_033022
TCONS_00064169 mRNA upstream 116527 39392442 ~ 39475304 (-) False XLOC_033023
TCONS_00064170 mRNA upstream 116527 39392442 ~ 39489190 (-) True XLOC_033023
TCONS_00064174 mRNA upstream 229650 39505565 ~ 39518489 (-) False XLOC_033024
TCONS_00064162 other downstream 37580 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 187678 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064135 other downstream 658386 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 829228 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 898090 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064176 other upstream 249009 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 817322 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 898301 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064235 other upstream 1296631 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 1349389 40625304 ~ 40625420 (-) True XLOC_033055

Expression Profile

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