RNA id: TCONS_00064151


Basic Information

Item Value
RNA id TCONS_00064151
length 538
RNA type nonsense_mediated_decay
GC content 0.40
exon number 3
gene id XLOC_033015
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39064824 ~ 39080701 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACATTCAGAGAATGAAGTCTTCAGTGGCCAGGAGAGCGAGCCGATCTCTCCCACATCTCCATCCCCTACTTCCAATCAGGGAAGTCTCCCACTGAAGGAAGGAGGTCAAGCGGGACAAAGATCCCAGAATAGCCTCTGAACCAAAGAAGTATGAAGAGAGTGCTCCTCCTAAGTTCAGCTCTGCAAGCAAGTACGCTGCCCTGCTAATGGACGGAGACCAGGGAGAAGAAGGTGATGGAGAGGAATGAACAATTAGGAAGGATCAACTACTACAGAAACACACAACAGGAGAAAATGAGCATGATCAAATTAGAGTTCCCTCATGCTGAAAGAATGGCCACAATGCTGTTTCTGTCACATTTATGGAAATTTATAAAGGTATTCCTGAAACTGgcccattttaataaaaaaaataaataaaataaaaacaaatcagtgCAGTGAGTAGATGAATGCATTCACACGTgtagacatttaaaaatcattGTTAATTTGAAAgtcattgttataaataaaaaagtatgtaAGATACTGTA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0097010 eukaryotic translation initiation factor 4F complex assembly biological_process
GO:0043024 ribosomal small subunit binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0034057 RNA strand-exchange activity molecular_function
GO:0033592 RNA strand annealing activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8563 Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Predicted to act upstream of or within translational initiation. Orthologous to human EIF4B (eukaryotic translation initiation factor 4B).

Ensembl:

ensembl_id ENSDART00000151424

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064142 lncRNA downstream 156812 38906751 ~ 38908013 (-) True XLOC_033011
TCONS_00065199 lncRNA downstream 300499 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064136 lncRNA downstream 300499 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00065198 lncRNA downstream 300501 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00064137 lncRNA downstream 300507 38762774 ~ 38764318 (-) True XLOC_033009
TCONS_00064156 lncRNA upstream 82482 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064161 lncRNA upstream 140362 39208854 ~ 39218590 (-) False XLOC_033019
TCONS_00064163 lncRNA upstream 146709 39215201 ~ 39218590 (-) True XLOC_033019
TCONS_00064172 lncRNA upstream 423354 39491846 ~ 39500044 (-) False XLOC_033024
TCONS_00064171 lncRNA upstream 423354 39491846 ~ 39500145 (-) False XLOC_033024
TCONS_00064148 mRNA downstream 13506 39039480 ~ 39051319 (-) True XLOC_033014
TCONS_00064147 mRNA downstream 27212 39013905 ~ 39037613 (-) True XLOC_033013
TCONS_00064146 mRNA downstream 40287 39011703 ~ 39024538 (-) False XLOC_033013
TCONS_00064143 mRNA downstream 58376 38954733 ~ 39006449 (-) False XLOC_033012
TCONS_00064144 mRNA downstream 59692 38955062 ~ 39005133 (-) False XLOC_033012
TCONS_00064154 mRNA upstream 55052 39123544 ~ 39160422 (-) False XLOC_033016
TCONS_00064155 mRNA upstream 58806 39127298 ~ 39158953 (-) False XLOC_033016
TCONS_00064157 mRNA upstream 93802 39162294 ~ 39167732 (-) True XLOC_033017
TCONS_00064158 mRNA upstream 121910 39190402 ~ 39198912 (-) False XLOC_033018
TCONS_00064159 mRNA upstream 126128 39194620 ~ 39199070 (-) True XLOC_033018
TCONS_00064135 other downstream 467041 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 637883 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 706745 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064130 other downstream 707112 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064123 other downstream 1449342 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064162 other upstream 144769 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064176 other upstream 456432 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 1024745 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 1105724 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064235 other upstream 1504054 40572546 ~ 40573270 (-) False XLOC_033053

Expression Profile

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