RNA id: TCONS_00064159


Basic Information

Item Value
RNA id TCONS_00064159
length 791
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_033018
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39190402 ~ 39199070 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTGCAAGCGTTCAGGCGTTCAAGTaggattttcttttgttttttaaataaaagcgaCTCATCGTTATGAGATGGTCGCTGTGAGGTGAGGGTCTCTACATACAGAGCTCGTGATGAAGGCTCTCGGCGCGCGCTCCGCGTTCTACGTGGGCTTTCTGGTGGGCACGTGCAGCTTATACCTGCTCCTGCGTCAGGCTGGGTTCACCCGGGACTCGGGGTCTCGTGAGCCCGGGACCCACGATAAAACCCTGCTGGAAATGCTTGAAGAAGAAAACAAGAACTGGAAGAAGGAGAGGTCGGCTCTTTTCAACCTCAATCATCCGCACCATACAGGTGAGGATGGCGCACTGGCTGACTCTCTTTATAAGCGTGTACGCATTCTCTGTTGGGTTATGACTGGCCCTGATAACCTGGAAAAGAAAGCTCGGCATGTGAAAGCCACATGGAGTCGTCACTGCAACATTGTGGTCTTTATAAGCTCTGTGGACAATCCAGATTTTCCCACAGTTGGCCTGAACACTAAAGAAGGTCGGGATCAGCTATACTGGAAAACCATCCGCGCTTTCCACTATGTCATGGAGAAGCACGGCGATGAGGCCGACTGGTTTCTCAAAGCAGATGATGACACTTATGTGATCGTTGACAACCTGCGCTGGATTCTGGCTCGCCATTCTCCAGAGGACCCAGTGTACTTTGGCCGGCGTTTTAAGCCATATGTAAAACAGGGCTACATGAGTGGAGGTGCTGGCTATGTGCTCAGCAAAGAAGCTCTGAGGAGGTTTGTGGAGGG

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016267 O-glycan processing, core 1 biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9075 Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1; angiogenesis; and kidney development. Predicted to act upstream of or within O-glycan processing. Predicted to be integral component of membrane. Is expressed in EVL; notochord; and periderm. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1).

Ensembl:

ensembl_id ENSDART00000131793

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064156 lncRNA downstream 43131 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064153 lncRNA downstream 124850 39068084 ~ 39069770 (-) True XLOC_033015
TCONS_00064142 lncRNA downstream 286607 38906751 ~ 38908013 (-) True XLOC_033011
TCONS_00064136 lncRNA downstream 430294 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064161 lncRNA upstream 9784 39208854 ~ 39218590 (-) False XLOC_033019
TCONS_00064163 lncRNA upstream 16131 39215201 ~ 39218590 (-) True XLOC_033019
TCONS_00064172 lncRNA upstream 292776 39491846 ~ 39500044 (-) False XLOC_033024
TCONS_00064171 lncRNA upstream 292776 39491846 ~ 39500145 (-) False XLOC_033024
TCONS_00064173 lncRNA upstream 292776 39491846 ~ 39506586 (-) False XLOC_033024
TCONS_00064157 mRNA downstream 26888 39162294 ~ 39167732 (-) True XLOC_033017
TCONS_00064154 mRNA downstream 34198 39123544 ~ 39160422 (-) False XLOC_033016
TCONS_00064155 mRNA downstream 35667 39127298 ~ 39158953 (-) False XLOC_033016
TCONS_00064150 mRNA downstream 113919 39064824 ~ 39080701 (-) False XLOC_033015
TCONS_00064160 mRNA upstream 3615 39202685 ~ 39218609 (-) False XLOC_033019
TCONS_00064164 mRNA upstream 57100 39256170 ~ 39275915 (-) False XLOC_033020
TCONS_00064165 mRNA upstream 59490 39258560 ~ 39275793 (-) False XLOC_033020
TCONS_00064166 mRNA upstream 67976 39267046 ~ 39270851 (-) True XLOC_033020
TCONS_00064167 mRNA upstream 109428 39308498 ~ 39313027 (-) True XLOC_033021
TCONS_00064151 other downstream 126128 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064135 other downstream 596836 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 767678 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 836540 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064130 other downstream 836907 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064162 other upstream 14191 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064176 other upstream 325854 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 894167 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 975146 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064235 other upstream 1373476 40572546 ~ 40573270 (-) False XLOC_033053

Expression Profile

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