XLOC_033043


Basic Information

Item Value
gene id XLOC_033043
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40173228 ~ 40182520 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064752
CTCGGCTTCCGTGCGACTGTGAGTGCTGTGCTGCTGCTGGAGCTGCTCCTCGGGGTGGGCGGCAATCTGACCGTGCTGGTGTTATACTGTGGTCACTGCAGCCTGCTGGAGTCTGTCAGCCATGCGGTCACTCTCAGCCTGCACACCCTTGACCTGCTGCTCTGTCTCCTCTGCCTACCCATCACTGCCACGCTCCTCATACTGGGTGGAGCCTCGGTTCCGCACCACGCCCTCCTCTGCTGTCTCCACGAATCAGCAGCCAGCTTCGCCAGCGTGGGCACAGCACTCAACCTGCTGCTTATCAGTTTAGATCGCTATGACATCAGCGTCCGACCAGCCAATCGCCTGCTGACGCCTCGAAGGGCAGCTGTTTTACTTGTGGCAGTGTGGGTGCTTTCTCTAGCTGTGCCACTTCTTCCATTCGTGGAGGCAGGGTTTGTGTCAGGGCAAGGCGAGGGGGTGTTTGTGCACACAAATGGCACTGTGCTTTGTTCAGAGTGGGGGGGGACTCTACAGGCTCATCTGTTACTGCAGGTTCCTGTGTTCCTGTGCTCTCTCGCTGTGATGCTATTTACATACTCACGAATTCTGCAGACTCTGCGCATCCGCATTGGACGCACACCCAGGCCACATCGAGACAGCAAACGGCCTGCACATCGCCTCTGGTTGCGTCGTAAAAGGTCAACAAGGTCACCGGATCACATGACGAGGAATACGCCCACATCACCACCACCACTTTCAACTGGGCCACTAATCATCATGGGTGTGGGTGCGTCAGTGTCAGCCATTTTAGCTCTGCGCCGAGCAGTTCGGCGCCACCGGGATCGACGAGAACGTCAGAGGCGAGTCTTTCGCATGTCTGTGATCATCATTCTCTCGTTTCTCCTATGCTGGGCGCCACTCTCCATTATGCCCATTCTTATGCTGGCAATCGGGCCGTCTGATTGGCTGGAACGCCTGAGACTTTGCTTCCTTGTGCTCGCTTATTGGACGGTAGTGCTACATCCGCTGCTGTATGCGTTTACAAGGCAAAAACTGCGCAAAGTTCTGCATACCCGTCTGCGCAGG
>TCONS_00065204
GACTGCAGACAGTAGCTCGTGCGTTTCCACGATGAAGCCTGCAGTTttggtgtgtgcgtgcgtgcgtgagtgagtgtgtatgcgcGCTCGCGCAGATGGAGCGGGTTCTTTCAGTCTGTCTAGTTCGCAGGATAGCGGCACTCATGGGTACTCACAGAAGCACCGTAGCGATTTCTACCACCGTTTAGCACCACAGAAGGTGCGACATTTATTCCGGGCACGTACCTGCCAGCGGACAGTCCTGAAGCCCCCAGGAATCTCGCGCTCTAGTAGAGAGAGCGGAGCGCGCGCGCGGCACGGACCGCAGTGGAATGTAGCGGGGATTCCCGGCGCGCGGGGCAAGAGCTGTCAGTCATTCATCAACACCACAAGAAAACACCTGAGTAGGTGGAGCATGCCTAGTGGGAGCGGGTGGCATTACTATGCCTGAAGGCACGTGGCGATGGTGTCCATGGAGACAGATGGCAGCTTCACCGGGGGCCACGGTCTGTCCCTCTTACAGGCTGAAGATGGCGTGGGGGCCGGGCTCGCACAGCAAGAGGGCTCGTGGCTCGGCTTCCGTGCGACTGTGAGTGCTGTGCTGCTGCTGGAGCTGCTCCTCGGGGTGGGCGGCAATCTGACCGTGCTGGTGTTATACTGTGGTCACTGCAGCCTGCTGGAGTCTGTCAGCCATGCGGTCACTCTCAGCCTGCACACCCTTGACCTGCTGCTCTGTCTCCTCTGCCTACCCATCACTGCCACGCTCCTCATACTGGGTGGAGCCTCGGTTCCGCACCACGCCCTCCTCTGCTGTCTCCACGAATCAGCAGCCAGCTTCGCCAGCGTGGGCACAGCACTCAACCTGCTGCTTATCAGTTTAGATCGCTATGACATCAGCGTCCGACCAGCCAATCGCCTGCTGACGCCTCGAAGGGCAGCTGTTTTACTTGTGGCAGTGTGGGTGCTTTCTCTAGCTGTGCCACTTCTTCCATTCGTGGAGGCAGGGTTTGTGTCAGGGCAAGGCGAGGGGGTGTTTGTGCACACAAATGGCACTGTGCTTTGTTCAACTCTACAGGCTCATCTGTTACTGCAGGTTCCTGTGTTCCTGTGCTCTCTCGCTGTGATGCTATTTACATACTCACGAATTCTGCAGACTCTGCGCATCCGCATTGGACGCACACCCAGGCCACATCGAGACAGCAAACGGCCTGCACATCGCCTCTGGTTGCGTCGTAAAAGGTCAACAAGGTCACCGGATCACATGACGAGGAATACGCCCATGGGTGTGGGTGCGTCAGTGTCAGCCATTTTAGCTCTGCGCCGAGCAGTTCGGCGCCACCGGGATCGACGAGAACGTCAGAGGCGAGTCTTTCGCATGTCTGTGATCATCATTCTCTCGTTTCTCCTATGCTGGGCGCCACTCTCCATTATGCCCATTCTTATGCTGGCAATCGGGCCGTCTGATTGGCTGGAACGCCTGAGACTTTGCTTCCTTGTGCTCGCTTATTGGACGGTAGTGCTACATCCGCTGCTGTATGCGTTTACAAGGCAAAAACTGCGCAAAGTTCTGCATACCCGTCTGCGCAGG
>TCONS_00064217
GACTGCAGACAGTAGCTCGTGCGTTTCCACGATGAAGCCTGCAGTTttggtgtgtgcgtgcgtgcgtgagtgagtgtgtatgcgcGCTCGCGCAGATGGAGCGGGTTCTTTCAGTCTGTCTAGTTCGCAGGATAGCGGCACTCATGGGTACTCACAGAAGCACCGTAGCGATTTCTACCACCGTTTAGCACCACAGAAGGTGCGACATTTATTCCGGGCACGTACCTGCCAGCGGACAGTCCTGAAGCCCCCAGGAATCTCGCGCTCTAGTAGAGAGAGCGGAGCGCGCGCGCGGCACGGACCGCAGTGGAATGTAGCGGGGATTCCCGGCGCGCGGGGCAAGAGCTGTCAGTCATTCATCAACACCACAAGAAAACACCTGAGTAGGTGGAGCATGCCTAGTGGGAGCGGGTGGCATTACTATGCCTGAAGGCACGTGGCGATGGTGTCCATGGAGACAGATGGCAGCTTCACCGGGGGCCACGGTCTGTCCCTCTTACAGGCTGAAGATGGCGTGGGGGCCGGGCTCGCACAGCAAGAGGGCTCGTGGCTCGGCTTCCGTGCGACTGTGAGTGCTGTGCTGCTGCTGGAGCTGCTCCTCGGGGTGGGCGGCAATCTGACCGTGCTGGTGTTATACTGTGGTCACTGCAGCCTGCTGGAGTCTGTCAGCCATGCGGTCACTCTCAGCCTGCACACCCTTGACCTGCTGCTCTGTCTCCTCTGCCTACCCATCACTGCCACGCTCCTCATACTGGGTGGAGCCTCGGTTCCGCACCACGCCCTCCTCTGCTGTCTCCACGAATCAGCAGCCAGCTTCGCCAGCGTGGGCACAGCACTCAACCTGCTGCTTATCAGTTTAGATCGCTATGACATCAGCGTCCGACCAGCCAATCGCCTGCTGAC

Function

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000040703

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064752 False 1068 lncRNA 0.57 2 40173228 40174568
TCONS_00065204 False 1567 lncRNA 0.58 4 40173228 40182520
TCONS_00064217 True 903 processed_transcript 0.60 2 40174216 40182520

Neighbor

gene id symbol gene type direction distance location
XLOC_033042 ip6k2b coding downstream 10478 40089743 ~ 40162750 (-)
XLOC_033041 sec61a1 coding downstream 101329 40065201 ~ 40071899 (-)
XLOC_033040 chchd4b coding downstream 109764 40060409 ~ 40063464 (-)
XLOC_033039 uroc1 coding downstream 114542 40045035 ~ 40058686 (-)
XLOC_033038 NA coding downstream 129117 40038692 ~ 40044111 (-)
XLOC_033044 col7a1 coding upstream 1715 40184235 ~ 40312091 (-)
XLOC_033045 ttll3 coding upstream 146788 40329308 ~ 40352215 (-)
XLOC_033046 NA coding upstream 200904 40383424 ~ 40409125 (-)
XLOC_033047 si:dkey-28n18.9 coding upstream 239704 40422224 ~ 40429414 (-)
XLOC_033048 ccdc174 coding upstream 247253 40429773 ~ 40435025 (-)
XLOC_033025 CU467856.1 non-coding downstream 647723 39524924 ~ 39525505 (-)
XLOC_033024 NA non-coding downstream 651396 39491846 ~ 39521832 (-)
XLOC_033009 NA non-coding downstream 1408902 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 non-coding downstream 1575444 38597669 ~ 38597784 (-)
XLOC_033052 NA non-coding upstream 294910 40477430 ~ 40482198 (-)
XLOC_033055 CU855953.1 non-coding upstream 442784 40625304 ~ 40625420 (-)
XLOC_033056 NA non-coding upstream 443111 40625631 ~ 40629161 (-)
XLOC_033058 dre-mir-429b non-coding upstream 470609 40653129 ~ 40653238 (-)

Expression


Co-expression Network