XLOC_033047 (si:dkey-28n18.9)


Basic Information

Item Value
gene id XLOC_033047
gene name si:dkey-28n18.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40422224 ~ 40429414 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064223
AGTGGAAAGAGGACACCTAAAACTAAACACATTGGACAGAATTTCACCTACAGCCAAATAGCAGAAGAGTGGCCTTTGATCTGAAGGATATCCTGCCTCCGCAAGAATATTTCTGGTTTAGTCCCTTTTTGAAGATAGAAAAGCTGAATCCTGTTGAATGCCACGACGATGGATGATTCGAGTGCAGAAACAGTGCTAAGTGTGAGTGCAAACAGCATCAGAATTACTGACGTCACTCAGGATGGAGACGTTCTGACGTTTGCAATCACGTCCCAGAAACTGAACAGCagtgctggtgtgtgtgttttccgAACATATGAGGACTTTGACTGGCTTCAGCAGAGTTTTTTCTCACAAGAAAATGTTCCTGGACTTCAGGGAATTATAtTTCCACCTTTGCCCTCAAAAGCATTTCCATTGCAGTCAAGCACACAGGCCAAAGCACTCAAACAACTTGGGTTTCTGGCTCTGGGACAGAATTGGCAGAGTTATTGTAAGGCTTTGGAGTTTTATCTCCAGCAGGCGGCGACACATCCTACTCTCTGCAAGTGCAAAGCACTGGACAGCTTTCTTACAAACTCTGagtcTCCTGGTAAACAGAAAGGAAAGAAAGGAATCTTTAATCGCCTCAGTCAGGCTGTGGAGGAGATGAGGAAAGAAAGTCATAAGgatgttGACAACTTCTTTCAGAACgagagaaataaaaacacaaatctgGCTGCTTCGTCAAAGGTTGCCACAGAGAAATTACTGGACGTTGTGATGACAGAGCAAAAGCTTGCTTTGGCCTGTGGTCATTTCTCCACATCTCTTCATCTTTGTGTGAATCAGGATGACGCAGCTGCTGTTGCCTTCTCCAAGGTTTGTTTGAAACTGTCGGATATTATCGAGGCTATAAAGaGAAACTTTGAGAAAGTTGCCAGCAACAACCTCTCCACACTTGGTTTGGGTCTGGACCTGGAGTCTCGCTACCAAGAGGCAGAGAAAGAGATGCTCTTCAGACGAACCTGTAAACTGATCGAGCTTGAAACTGTCAAGAAGAGTACGGAAAAGGCCAAACCCCATAAAAGAGAAGTGATGGAGGCGTTTCAGAAAGCTGTTGAGAAAGAGTTCAGCCTGATTTCATCTGTGGCCAAAGAAGAGATTGAACGTTTCCACGCCTCCAGAGTGAATGTGCTGAAGAGCTTCATGGTTTGCTGGTGTGAACAACAGCTCGACACAGCTAAGGAGTGTGCTCAACTCTATTCTCAGCATCTGGAAGCTTTCAAGAACATGTACTCCGAATAAACGCCACACAAACAGGCTGTAGATGATAGGAATTTGCCTGATGTTATCaaatttttgctagaataaaaagGAGATCGTCATAAAGTAA
>TCONS_00064224
GTCAGTGGAAAGAGGACACCTAAAACTAAACACATTGGACAGAATTTCACCTACAGCCAAATAGCAGAAGAGTGGCCTTTGATCTGAAGGATATCCTGCCTCCGCAAGAATGTATGTGTGAGCATTTTGTATATCCAGAGAGAGTGGCGAGAGgaaacacagagaaaacagagGTGAAAAGAGGAGATTAAAGAGGGTTCTTGTGGAATATTGAGAAATGATCTTCTGTGACTTTTTCAGATTTCTGGTTTAGTCCCTTTTTGAAGATAGAAAAGCTGAATCCTGTTGAATGCCACGACGATGGATGATTCGAGTGCAGAAACAGTGCTAAGTGTGAGTGCAAACAGCATCAGAATTACTGACGTCACTCAGGATGGAGACGTTCTGACGTTTGCAATCACGTCCCAGAAACTGAACAGCagtgctggtgtgtgtgttttccgAACATATGAGGACTTTGACTGGCTTCAGCAGAGTTTTTTCTCACAAGAAAATGTTCCTGGACTTCAGGGAATTATAtTTCCACCTTTGCCCTCAAAAGCATTTCCATTGCAGTCAAGCACACAGGCCAAAGCACTCAAACAACTTGGGTTTCTGGCTCTGGGACAGAATTGGCAGAGTTATTGTAAGGCTTTGGAGTTTTATCTCCAGCAGGCGGCGACACATCCTACTCTCTGCAAGTGCAAAGCACTGGACAGCTTTCTTACAAACTCTGagtcTCCTGGTAAACAGAAAGGAAAGAAAGGAATCTTTAATCGCCTCAGTCAGGCTGTGGAGGAGATGAGGAAAGAAAGTCATAAGgatgttGACAACTTCTTTCAGAACgagagaaataaaaacacaaatctgGCTGCTTCGTCAAAGGTTGCCACAGAGAAATTACTGGACGTTGTGATGACAGAGCAAAAGCTTGCTTTGGCCTGTGGTCATTTCTCCACATCTCTTCATCTTTGTGTGAATCAGGATGACGCAGCTGCTGTTGCCTTCTCCAAGTT

Function

symbol description
si:dkey-28n18.9 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport.

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-205 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport.

Ensembl:

ensembl_id ENSDARG00000097193

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064223 False 1375 mRNA 0.44 15 40422224 40429411
TCONS_00064224 True 995 mRNA 0.44 9 40425066 40429414

Neighbor

gene id symbol gene type direction distance location
XLOC_033046 NA coding downstream 13099 40383424 ~ 40409125 (-)
XLOC_033045 ttll3 coding downstream 70009 40329308 ~ 40352215 (-)
XLOC_033044 col7a1 coding downstream 110133 40184235 ~ 40312091 (-)
XLOC_033043 NA coding downstream 239704 40173228 ~ 40182520 (-)
XLOC_033042 ip6k2b coding downstream 259474 40089743 ~ 40162750 (-)
XLOC_033048 ccdc174 coding upstream 359 40429773 ~ 40435025 (-)
XLOC_033049 tatdn2 coding upstream 10444 40439858 ~ 40449399 (-)
XLOC_033050 vhl coding upstream 21856 40451270 ~ 40455109 (-)
XLOC_033051 crbn coding upstream 27384 40456798 ~ 40466861 (-)
XLOC_033052 NA coding upstream 48016 40477430 ~ 40482198 (-)
XLOC_033038 NA non-coding downstream 378113 40038692 ~ 40044111 (-)
XLOC_033025 CU467856.1 non-coding downstream 896719 39524924 ~ 39525505 (-)
XLOC_033024 NA non-coding downstream 900392 39491846 ~ 39521832 (-)
XLOC_033055 CU855953.1 non-coding upstream 195890 40625304 ~ 40625420 (-)
XLOC_033056 NA non-coding upstream 196217 40625631 ~ 40629161 (-)
XLOC_033058 dre-mir-429b non-coding upstream 223715 40653129 ~ 40653238 (-)
XLOC_033059 dre-mir-141 non-coding upstream 226589 40656003 ~ 40656085 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G491031 NA non-coding CI01000340 null 9620240 ~ 9623041 (+)