RNA id: TCONS_00064171


Basic Information

Item Value
RNA id TCONS_00064171
length 784
lncRNA type antisense
GC content 0.45
exon number 3
gene id XLOC_033024
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39491846 ~ 39521832 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGGACCCTCTTTGACTCTTGCAGAACTTTGTTGGTGTCTTTGACCGAGCACAGAACCAGAGTGCAAACCACAGCATCCACCGAGCTGTCCTCCACTGCCTGCAGATTCTCCCCCGACGCCACTATGAAGTTGTCGTACTCCAGGTTGTCATAAACTTACAGGCCTCAGGACCCTCTTTGCCTCCTGCAGAACTTTGTTGGTGTCTTTGACCGAGCACAGAACCAGAGTGCAAACCACAGCATCCACCGAGCTGTCCTCCACCGCCTGCAGATTCTCCCCCGACGCCACTATAAAGCTGTCGTACACCAGTGGCTTCAGTGAGCAAACACTGTCATGGCTGGTGGTGCATTGCACAGCAAGGCTTCGTCCACTTGAGGCTCATCAGCGAGGACTGGAAAAGATGCTCAAGTGGCCCAGAAGGGGGAGTTGATGTAGGCTGAAAGTCTAAAGCTGTTGTTTCCTTTCACCTCCTAACAGGATTAGAGGAAGATTAACTACTGCCCGCAACCTTTGACCACACAGTATCTGCTTCCATGACTGCACTCCCACAGGGCTTGAACCATATCCTTAAAAATGTAGGACGTTTTTACAACAGTGCCCTAGAAGTATTGTTTTTGGTTCTCTGaagaactttatttttatttatcttttattctcATGTGAAggacaaatgttttatgcatattaatgatttcTCATTTAACCACACtaagagattattattattaattatcaggTTCTGTATATCTTTTGATAGATTTTTCTCATTTGTTTATGGCTat

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0051168 nuclear export biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0071166 ribonucleoprotein complex localization biological_process
GO:0071426 ribonucleoprotein complex export from nucleus biological_process
GO:0071427 mRNA-containing ribonucleoprotein complex export from nucleus biological_process
GO:0000346 transcription export complex cellular_component
GO:0000347 THO complex cellular_component
GO:0000445 THO complex part of transcription export complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000151076

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064161 lncRNA downstream 273256 39208854 ~ 39218590 (-) False XLOC_033019
TCONS_00064163 lncRNA downstream 273256 39215201 ~ 39218590 (-) True XLOC_033019
TCONS_00064156 lncRNA downstream 340357 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064153 lncRNA downstream 422076 39068084 ~ 39069770 (-) True XLOC_033015
TCONS_00064142 lncRNA downstream 583833 38906751 ~ 38908013 (-) True XLOC_033011
TCONS_00064185 lncRNA upstream 161870 39662015 ~ 39666518 (-) False XLOC_033029
TCONS_00064186 lncRNA upstream 161931 39662076 ~ 39666526 (-) True XLOC_033029
TCONS_00064193 lncRNA upstream 374041 39874186 ~ 39887686 (-) False XLOC_033033
TCONS_00064194 lncRNA upstream 374041 39874186 ~ 39893526 (-) False XLOC_033033
TCONS_00064198 lncRNA upstream 398174 39898319 ~ 39903271 (-) False XLOC_033034
TCONS_00064170 mRNA downstream 2656 39392442 ~ 39489190 (-) True XLOC_033023
TCONS_00064169 mRNA downstream 16542 39392442 ~ 39475304 (-) False XLOC_033023
TCONS_00064168 mRNA downstream 147587 39336731 ~ 39344259 (-) True XLOC_033022
TCONS_00064167 mRNA downstream 178819 39308498 ~ 39313027 (-) True XLOC_033021
TCONS_00064166 mRNA downstream 220995 39267046 ~ 39270851 (-) True XLOC_033020
TCONS_00064174 mRNA upstream 5420 39505565 ~ 39518489 (-) False XLOC_033024
TCONS_00064175 mRNA upstream 9289 39509434 ~ 39521832 (-) True XLOC_033024
TCONS_00064177 mRNA upstream 30990 39531135 ~ 39605734 (-) False XLOC_033026
TCONS_00064178 mRNA upstream 31556 39531701 ~ 39605734 (-) True XLOC_033026
TCONS_00064179 mRNA upstream 113212 39613357 ~ 39631181 (-) False XLOC_033027
TCONS_00064162 other downstream 273256 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 423354 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064135 other downstream 894062 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 1064904 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 1133766 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064176 other upstream 24779 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 593092 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 674071 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064235 other upstream 1072401 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 1125159 40625304 ~ 40625420 (-) True XLOC_033055

Expression Profile

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