Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064144 |
| length | 1364 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 9 |
| gene id | XLOC_033012 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 38954733 ~ 39006449 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0060119 | inner ear receptor cell development | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0071599 | otic vesicle development | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0055088 | lipid homeostasis | biological_process |
| GO:0042632 | cholesterol homeostasis | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0070644 | vitamin D response element binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080403-10 | Enables nuclear receptor activity. Contributes to DNA-binding transcription factor activity and vitamin D response element binding activity. Acts upstream of or within embryonic heart tube morphogenesis and inner ear development. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including digestive system; heart; intestinal bulb primordium; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); lipid storage disease (multiple); melanoma (multiple); and tuberculosis (multiple). Orthologous to human VDR (vitamin D receptor). |
| ensembl_id | ENSDART00000104116 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064142 | lncRNA | downstream | 47049 | 38906751 ~ 38908013 (-) | True | XLOC_033011 |
| TCONS_00065199 | lncRNA | downstream | 190736 | 38759546 ~ 38764326 (-) | False | XLOC_033009 |
| TCONS_00064136 | lncRNA | downstream | 190736 | 38759546 ~ 38764326 (-) | False | XLOC_033009 |
| TCONS_00065198 | lncRNA | downstream | 190738 | 38759546 ~ 38764324 (-) | False | XLOC_033009 |
| TCONS_00064153 | lncRNA | upstream | 62951 | 39068084 ~ 39069770 (-) | True | XLOC_033015 |
| TCONS_00064156 | lncRNA | upstream | 145841 | 39150974 ~ 39151489 (-) | True | XLOC_033016 |
| TCONS_00064161 | lncRNA | upstream | 203721 | 39208854 ~ 39218590 (-) | False | XLOC_033019 |
| TCONS_00064163 | lncRNA | upstream | 210068 | 39215201 ~ 39218590 (-) | True | XLOC_033019 |
| TCONS_00064172 | lncRNA | upstream | 486713 | 39491846 ~ 39500044 (-) | False | XLOC_033024 |
| TCONS_00064141 | mRNA | downstream | 24336 | 38905047 ~ 38930726 (-) | False | XLOC_033011 |
| TCONS_00064139 | mRNA | downstream | 136480 | 38794951 ~ 38818582 (-) | False | XLOC_033010 |
| TCONS_00064138 | mRNA | downstream | 138562 | 38791900 ~ 38816500 (-) | False | XLOC_033010 |
| TCONS_00064140 | mRNA | downstream | 138562 | 38795325 ~ 38816500 (-) | True | XLOC_033010 |
| TCONS_00064133 | mRNA | downstream | 535744 | 38366936 ~ 38419318 (-) | False | XLOC_033007 |
| TCONS_00064146 | mRNA | upstream | 6570 | 39011703 ~ 39024538 (-) | False | XLOC_033013 |
| TCONS_00064147 | mRNA | upstream | 8772 | 39013905 ~ 39037613 (-) | True | XLOC_033013 |
| TCONS_00064148 | mRNA | upstream | 34347 | 39039480 ~ 39051319 (-) | True | XLOC_033014 |
| TCONS_00064149 | mRNA | upstream | 59691 | 39064824 ~ 39080630 (-) | False | XLOC_033015 |
| TCONS_00064150 | mRNA | upstream | 59691 | 39064824 ~ 39080701 (-) | False | XLOC_033015 |
| TCONS_00064135 | other | downstream | 357278 | 38597669 ~ 38597784 (-) | True | XLOC_033008 |
| TCONS_00064134 | other | downstream | 528120 | 38367096 ~ 38426942 (-) | True | XLOC_033007 |
| TCONS_00064131 | other | downstream | 596982 | 38355762 ~ 38358080 (-) | True | XLOC_033006 |
| TCONS_00064130 | other | downstream | 597349 | 38132511 ~ 38357713 (-) | False | XLOC_033006 |
| TCONS_00064123 | other | downstream | 1339579 | 37615366 ~ 37615483 (-) | True | XLOC_033003 |
| TCONS_00064151 | other | upstream | 59692 | 39064825 ~ 39068492 (-) | False | XLOC_033015 |
| TCONS_00064162 | other | upstream | 208128 | 39213261 ~ 39218590 (-) | False | XLOC_033019 |
| TCONS_00064176 | other | upstream | 519791 | 39524924 ~ 39525505 (-) | True | XLOC_033025 |
| TCONS_00064216 | other | upstream | 1088104 | 40093237 ~ 40162742 (-) | False | XLOC_033042 |
| TCONS_00064217 | other | upstream | 1169083 | 40174216 ~ 40182520 (-) | True | XLOC_033043 |
