RNA id: TCONS_00064133


Basic Information

Item Value
RNA id TCONS_00064133
length 1853
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_033007
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38366936 ~ 38426942 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTTCAAGCGTCCGCGCTTGTGCCGCACGCAGGCGCCAGTTTAATCGCGCTTTTCTCTGAATAAGCTCAAACAAGATAAGTTTGGAACCCAAGCGGCCGCTCAAATTTCCCTCGGGGGGTAATTATGCAGCGCGCGGAGGTGACGTCCTATTACTTTGGTCCCAAACACGAACAAATGCCACTGGAGTGACAGTCTGGCGATAGTCGGGAGAGCATCGGACGTCCAAACCGGCGACCCGGAGTGATGAAGAGGTCTTTGGGATGCGAGGCAAAGGAAGGGATGCTCTGCAGCGGCTGCTCAGTCACTGGATCGTGAAAGAGGACGGAACAATGAGCCTGTATGGTTAAGACTGGATATTTCTGAAGAAGAAGAACAACGCGTCGCACTACTGCTGTAAGCTGAACGTTGCGGGATTTTGCTCACTGCTTCAAAAGGAATTCGTTGCAGTTGTTCAACGTGGATCCACTGCACCATTCAGGTATTTAAGGTATGGGATATGGACCACACTGCAGCGGCAAAATGAGAAGTCTGTGGGTTGGTGTTTTGTTCATGACTTTGACCTGCCATCTGAGCCTCTCCCAGTCAACTACAGGGACCCCTAAAGAGTCAGAGCTCAATGATAACATCACAGTATTCACACGAATCCTTGACGGATTGCTGGATGGCTATGATAACAGACTTCGACCTGGGCTTGGAGAGAAAGTGACAGAAATCAAGACCAACATCTTTGTCACCAGCTTTGGACCAGTGTCAGATACTGAGATGGAATACACCATTGATGTGTTTTTCCGTCAAAGCTGGAAAGATGAGCGATTGTGCTTCAAGGGTCCAATGGAGATGCTACCTCTGAATAACCTGCTGGCCAGCAACATCTGGACACCCGACACCTTTTTCCTCAATGGCAAAAAATCCATTGCTCACAACATGACAACACCCAACAAGCTCCTGAGACTGAAGGATGATGGGACACTACTGTACACCATGAGATTGACCATATCAGCGGAGTGTCCAATGCAGTTGGAGGATTTCCCTATGGATGCCCATGCCTGCCCGCTCAAATTTGGCAGCTatgcCTATCCTATCTCGGAGGTGGTGTATAAATGGACAAAAGGCCCTGGCAAGTCTGTGGTAGTGGCAGAAGAAGGGTCACGTCTCAATCAATACCATCTAATTGGCCACACAGCTGGTACGGAAGACATCAGCACAAGTAGAGGTCAATACACTGTAATGATGGCCCACTTCTACCTGAAGAGGAAGATTGGTTACTTTGTGATTCAGACCTACATGCCGTGCTTCATGACTGTCATTCTGTCCCAAGTCTCATTCTGGCTCAACCGTGAATCCGTCCCAGCCAGGACTGTGTTTGGGGTGACCACAGTGTTGACCATGACCACCCTCAGCATCAGCGCCCGTAACTCTCTACCTAAAGTGGCGTATGCTACCGCCATGGACTGGTTCATAGCTGTCTGCTATGCCTTCGTGTTCTCTGCGCTTATTGAGTTCGCCACTGTCAACTACTTCACCAAACGCAGCTGGGCTTGGGATGGAAAGAAGGCGCTAGAAGCTCAGCAGCCTAAAAAAAAAGACCCATTGGCGCTCTCCAAAAAGCCAAACAACTTCACCGCCAACATCAACAAGGATGCGGCTATATCCACCATCTCCAACAGCACCACGGTCCAATTGAAGAGTGCCGAGGCCAAGCCTGCACCGGACCCCAAAAAGACCTACAATAGCGTCAGCAAAATTGACAAGATGTCCCGGATAGTGTTTCCGGTTCTCTTTGGAACTTTCAATTTGGTTTACTGGGCCACATACCTCAACAGGGAACCAGTGATTAAAGGAGCCGTTTAG

Function

GO:

id name namespace
GO:0060078 regulation of postsynaptic membrane potential biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0051932 synaptic transmission, GABAergic biological_process
GO:0007165 signal transduction biological_process
GO:0032590 dendrite membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0022851 GABA-gated chloride ion channel activity molecular_function
GO:0008503 benzodiazepine receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005237 inhibitory extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-30 Predicted to enable GABA-gated chloride ion channel activity; inhibitory extracellular ligand-gated ion channel activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in dendrite membrane and postsynapse. Predicted to be integral component of plasma membrane. Is expressed in central nervous system. Human ortholog(s) of this gene implicated in bipolar disorder; developmental and epileptic encephalopathy 79; and mental depression. Orthologous to human GABRA5 (gamma-aminobutyric acid type A receptor subunit alpha5).

Ensembl:

ensembl_id ENSDART00000138026

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065196 lncRNA downstream 8856 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00064129 lncRNA downstream 617239 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065195 lncRNA downstream 1022342 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00065194 lncRNA downstream 1738839 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00064099 lncRNA downstream 1814189 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00065197 lncRNA upstream 340228 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00065198 lncRNA upstream 340228 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00065199 lncRNA upstream 340228 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064136 lncRNA upstream 340228 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064137 lncRNA upstream 343456 38762774 ~ 38764318 (-) True XLOC_033009
TCONS_00064128 mRNA downstream 617225 37745719 ~ 37749711 (-) False XLOC_033005
TCONS_00064124 mRNA downstream 621428 37733608 ~ 37745508 (-) False XLOC_033004
TCONS_00064138 mRNA upstream 372582 38791900 ~ 38816500 (-) False XLOC_033010
TCONS_00064139 mRNA upstream 375633 38794951 ~ 38818582 (-) False XLOC_033010
TCONS_00064140 mRNA upstream 376007 38795325 ~ 38816500 (-) True XLOC_033010
TCONS_00064141 mRNA upstream 485729 38905047 ~ 38930726 (-) False XLOC_033011
TCONS_00064143 mRNA upstream 535415 38954733 ~ 39006449 (-) False XLOC_033012
TCONS_00064131 other downstream 8856 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064130 other downstream 9223 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064123 other downstream 751453 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064119 other downstream 868080 37498146 ~ 37498856 (-) True XLOC_033000
TCONS_00064112 other downstream 919793 37447028 ~ 37447143 (-) True XLOC_032997
TCONS_00064135 other upstream 178351 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064151 other upstream 645507 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064162 other upstream 793943 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064176 other upstream 1105606 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 1673919 40093237 ~ 40162742 (-) False XLOC_033042

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08513697_08528196.mRNA True 1534 mRNA 0.41 9 CI01000340 8513494 ~ 8528642 (-)