RNA id: TCONS_00064137


Basic Information

Item Value
RNA id TCONS_00064137
length 463
lncRNA type lincRNA
GC content 0.36
exon number 3
gene id XLOC_033009
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38759546 ~ 38764326 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCGTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTAATTGGCACACTCATTTGtttcctTCCAGGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGATACTGTGGGTTCGATTTATAGTCCATTATACCCAGGACTACAGTTCCCTTGATGTCTAACCACATAAGCGAGTCATTTACCATTTACTTTTTGTACTGCTGTGTTCACTTGTCTTAAAGAAGTTCATTGATTTAAAAGCTTGATGATTAGATTTTTGCAAGGATTTAGTTTTTCCTATAGCTCTGGTATTTCAAATCTgatactgcattttagtgtttttgtctttttatgttGGTAGGTTTGATGCCAAAAtgatcttttctttcttttcagattttcaaacagtTATCAAAATGGA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043038 amino acid activation biological_process
GO:0043039 tRNA aminoacylation biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0140053 mitochondrial gene expression biological_process
GO:0006457 protein folding biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005761 mitochondrial ribosome cellular_component
GO:0000313 organellar ribosome cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005840 ribosome cellular_component
GO:0101031 chaperone complex cellular_component
GO:0016272 prefoldin complex cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0016875 ligase activity, forming carbon-oxygen bonds molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000157081

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065196 lncRNA downstream 404694 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00064129 lncRNA downstream 1013077 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065195 lncRNA downstream 1418180 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00065194 lncRNA downstream 2134677 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00064099 lncRNA downstream 2210027 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00064142 lncRNA upstream 142433 38906751 ~ 38908013 (-) True XLOC_033011
TCONS_00064153 lncRNA upstream 303766 39068084 ~ 39069770 (-) True XLOC_033015
TCONS_00064156 lncRNA upstream 386656 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064161 lncRNA upstream 444536 39208854 ~ 39218590 (-) False XLOC_033019
TCONS_00064163 lncRNA upstream 450883 39215201 ~ 39218590 (-) True XLOC_033019
TCONS_00064133 mRNA downstream 343456 38366936 ~ 38419318 (-) False XLOC_033007
TCONS_00064132 mRNA downstream 343912 38366936 ~ 38418862 (-) False XLOC_033007
TCONS_00064128 mRNA downstream 1013063 37745719 ~ 37749711 (-) False XLOC_033005
TCONS_00064127 mRNA downstream 1018344 37734450 ~ 37744430 (-) True XLOC_033004
TCONS_00064126 mRNA downstream 1019050 37734326 ~ 37743724 (-) False XLOC_033004
TCONS_00064138 mRNA upstream 27582 38791900 ~ 38816500 (-) False XLOC_033010
TCONS_00064139 mRNA upstream 30633 38794951 ~ 38818582 (-) False XLOC_033010
TCONS_00064140 mRNA upstream 31007 38795325 ~ 38816500 (-) True XLOC_033010
TCONS_00064141 mRNA upstream 140729 38905047 ~ 38930726 (-) False XLOC_033011
TCONS_00064143 mRNA upstream 190415 38954733 ~ 39006449 (-) False XLOC_033012
TCONS_00064135 other downstream 164990 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 335832 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 404694 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064130 other downstream 405061 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064123 other downstream 1147291 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064151 other upstream 300507 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064162 other upstream 448943 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064176 other upstream 760606 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 1328919 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 1409898 40174216 ~ 40182520 (-) True XLOC_033043

Expression Profile

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