RNA id: TCONS_00064141


Basic Information

Item Value
RNA id TCONS_00064141
length 3093
RNA type mRNA
GC content 0.44
exon number 20
gene id XLOC_033011
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38905047 ~ 38930726 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagcgaacaactgttgatgtAGTGAGAAGAGAGGAAGCTGAGCAGGAGGGGCTTCAGTCAGTAAATGTAGCTGTACTGTATGTCACTCAGCTAAATCACACCTTTGGAGTTTACAGCAGTGGAGCGCCAGTGTTTCTGCAGATGCTTGCATTTCAGATTTCTGCTGTTCATTTTATAGTGTGGACTCTAAAGTGAGCAAATGCATTTTAGTTGGTTTTGAGGACTTGATGCCCGGAAGTACATATTAGAAGTGGAAAAGATATGCAGACGTGACAGATGTCTCACCATCAGCAGCACCGGACACTGGAGAGAGGGAGGAGGAGCACACAAGAGGACAAACTGTCTTTGAGGAAAGAGAGCGAACAAACAGGTGCTGGCTGTAGTCTCTCGGTGAGAAGAAAGCTGTATGAGTATATCTGCAATAAGCAGCACAGGACATCTGCAGGTCAGGACATACAGCAGCGTGAATTAGACCGACAGGAAGAGGACAATCCACTAAGAAGAACAGccTCTGAGCCTATTCTGAAGCTGCGATCAAAGAGAAGTATGACGGGGAGACAGAATCCATTGCAGCGTAAAACCAGCGCGCCCCCTGCTGTCGGGGATCCAGACTCCATGGcgGTTTCTGCCAGTTCTGCTACAGTTTCATCACTAGATAATCAAATGAATCGTCAAGAGCTGATTCAAACCACAACCTACAGTGCATCATCAGGCAAGGAAGACTCTCCTTTACAAATCAGCATTCAGCACCCCGTCCTCTGGCCTGCATATGCTGCCACTGCTTACAATCCTCAGGTCTTCACTCTTTATCCACATATTTTTACAGTTACTGGGCAGCAGTGGCCGCCGATGCCTCATAGACCTTTAATCAAATCCCAGTCAGCACCTTCTTATATACagcaatacacacatatacacactccgGCTTATACACTGGTACAACCCATGTACCAACAACAGTGGCCACAAGAGACATTCCAGCAACACACCCTTCCAGAAAAGGTTTCAGTTGGCCCAGCATGGCCTGAGTCTCCTGGAGATCTGGGAAGGTTCAGAAAGAGAACAAGTGAGGAAGTACGCATTTCATCTCAATCCCCGCTTGAAAGCTGTAATCGACAGGGAGTTCAGCTGAAAGAAAACTTGGAATGGAGACACAAAATATTTCACCAGCAGGTTTCACGTGTGCATTCCTTTCCAGACACCTTTGACACACGTCTGTCTTCACATTCAGCCTCAGCTCTGGACATGAGAAAACCAAACTTCACCACAGGCTTGGTGTATGAGATGATGAAGCATAGGTGTGACTGTAGAGACAGCAGCTGTGGTCTTCATGAAGCTGACCGAGTTACAAGTATCTGGTCAAGACTGCAGGAGTGTGGCCTGAGGAGTCAGTGTAAGCTGCTTAAAGGCAGGTCAGCCACTGTCGAGGAGCTACTCTCAGTCCATTCAGAGgaacttgtttgttttttcactgGACCAGAACCATATCGAAGTCAAATGGACATTGGTACGATGTGGAAAAATCCCAGAAATTCAGAGGCACTGAAGATGGCTGTTGGTAGCGTGACAGAGCTAGCGCTGTGTGTGGCCAGAGGAGACCTGAGGAATGGCTTTGCTGTAGTCACACCTCCTGGACATCATGCATCACGTTCTCAAACACTTGACTCCATTGTTTTTAATTCTGTGGCCATTGCAGCTAAACAGCTTCAAGAACAATTAAAGGTTAAAAAGATCCTTATTGTAGATTGGGATGTTCATCATGGCAGTGGAACTGAGTCGATATTCTACACAGATCCCAGTGTCCTCTATATTTCTCTGCATCGCTATGATGATGGCGCATTTTTCAATGGTACTGGAGATCCCAGCAGGGTAGGATGTGATGTTGGAAGAGGTTATAATGTAAATGTGGCCTGGTCGGGAGGACTGAGACCTCCAATGGGAGATGCTGAATACCTCGCTGCATTCAGAACGGTAGTCATGCCAATTGCTCATGAGTTTTCCCCAAATGTGGTCCTGGTTTCAGCTGGTTTTGATGCTGCCGAGGGGCATCCAGCTGCTCTGGGAGGATACAGAGTCTCCCCTAAATGTTTTGGATGGCTGACGCAGAAGTTAATGGAGCTTGCTGAAGGACGAGTAGTGCTGGTGTTAGAGGGAGGTTATGAGCTTGTCTCCCTTTGCGATGCGTCCCAAGCTTGTGTCAGTGCTCTTCTAGGAAatgagCCTGAGCCTTTATCTGAGGTGGAGTTACTGAGAAGTCCCTGTGCTAATGCAGTCTGTTCTCTGGAGAAAGTGCTGCATGTTCAGAGTTTGCACTGGCGTTCAGTGCGGTCCATGCTGAATACTGTGTCTCTGTCCTATGTTAAAGCAGAGAGGAGAGTCTCGGCAGGCAGTGAAGCTGCTTTAGTGCTGAGTGGCCTCAATATGACTGTTCCACACAGAAGACAATTGCCCAATGAGCCAGTGGAGGACGATGAAACCCATTCGACAGTTTCCTTTACTAGAAGAACCTTTTCCTTTCAAAGCAGAAGCTGATCAATAATCTGctgtaagctgaaggaaatgcaGGACACAATCCAAAAAAAGAGCACTTCTCTAATCACACGAATGCTTCACTCAAATGCTGAGTCAtttctgaggtttttttttttttacttaacattaGCTTGCACATGACAGACAAATCAAACTAGCATAGTACAAACAGGAAATGAACATGTATGAGAAATGAGTTTTAAAGGTTCTTGTTCAGGATATTTGACTGTTTAGTGGAACAAATTTGGTAGACACTGCTTTTTAAAGGTTTGGTTCAGtcctttattttgtttgttgaaaaaacaacaacaagaaaaacgTAAAATGTGAAATCTTTGCTGGTTTTTAAGCTGTCTGTTAACTAAATAATCTGGCAGATATGCAGCATAGTTTTCAGAAAACATTCACAGTAATTCACGTTTCTTAAGTATCAAATCATATTTCTAAACGATCAGGTGACGCTGAACACTGGAATAATAACCATGAAAGAACAtgggaataaattaaattgtaattacataatatattttttcaaatacattttctatttttttagaatat

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-113 Predicted to enable hydrolase activity. Predicted to be located in nucleus. Orthologous to human HDAC7 (histone deacetylase 7).

Ensembl:

ensembl_id ENSDART00000154151

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065199 lncRNA downstream 140721 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064136 lncRNA downstream 140721 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00065198 lncRNA downstream 140723 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00064137 lncRNA downstream 140729 38762774 ~ 38764318 (-) True XLOC_033009
TCONS_00065197 lncRNA downstream 141200 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00064153 lncRNA upstream 137358 39068084 ~ 39069770 (-) True XLOC_033015
TCONS_00064156 lncRNA upstream 220248 39150974 ~ 39151489 (-) True XLOC_033016
TCONS_00064161 lncRNA upstream 278128 39208854 ~ 39218590 (-) False XLOC_033019
TCONS_00064163 lncRNA upstream 284475 39215201 ~ 39218590 (-) True XLOC_033019
TCONS_00064172 lncRNA upstream 561120 39491846 ~ 39500044 (-) False XLOC_033024
TCONS_00064139 mRNA downstream 86465 38794951 ~ 38818582 (-) False XLOC_033010
TCONS_00064138 mRNA downstream 88547 38791900 ~ 38816500 (-) False XLOC_033010
TCONS_00064140 mRNA downstream 88547 38795325 ~ 38816500 (-) True XLOC_033010
TCONS_00064133 mRNA downstream 485729 38366936 ~ 38419318 (-) False XLOC_033007
TCONS_00064132 mRNA downstream 486185 38366936 ~ 38418862 (-) False XLOC_033007
TCONS_00064143 mRNA upstream 24007 38954733 ~ 39006449 (-) False XLOC_033012
TCONS_00064144 mRNA upstream 24336 38955062 ~ 39005133 (-) False XLOC_033012
TCONS_00064145 mRNA upstream 46290 38977016 ~ 39005133 (-) True XLOC_033012
TCONS_00064146 mRNA upstream 80977 39011703 ~ 39024538 (-) False XLOC_033013
TCONS_00064147 mRNA upstream 83179 39013905 ~ 39037613 (-) True XLOC_033013
TCONS_00064135 other downstream 307263 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 478105 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064131 other downstream 546967 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064130 other downstream 547334 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064123 other downstream 1289564 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064151 other upstream 134099 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064162 other upstream 282535 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064176 other upstream 594198 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064216 other upstream 1162511 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 1243490 40174216 ~ 40182520 (-) True XLOC_033043

Expression Profile

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