RNA id: TCONS_00064119


Basic Information

Item Value
RNA id TCONS_00064119
length 601
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_033000
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37478765 ~ 37513133 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGTCCAAGTTACCGGTTAAAACCTGATGAGGCAAATCTGGCAATGagatcttaaaatgtatggaaaaagtcttaaaatgtcttaaaaggtGTTGAATTTAACTCCATGATCCTTGTATAAAGGTCCCTCGACGTCCTTTTCCTCTAACAAGTATGGAAGCAAACCAGGCACCCCCGCCTCTGCTCAGAAGAAACCAGCAGAGgTGTTCAGAAAAGACCTGATCAGTGCGATGAAGCTGCCAGACTCTCACCATATTTCTTCAGAGGATTATTACCTGTTGGCAGACACATGGAAGCAGGAATGGGAGAAAGGAGTGCAAGTGCTGGCCAGTCCAGACACTATCCCTCAGCCCTCTGTGAGGTATGTCACTTTGAGTATAAACTGGGGGGAAGAAAAGTATTGGACGTGCACGCTCTTGCATATGGTTTAAGGGGGTCTGGTTATGTTTTTATTCTTTCAGCTTTGCAGTTTTTGCATGAAAGAGATCTTCAACAAAACCTGAATTGAACTGAAATGCATTGAACTCAACGAACAAGCCAGTATTGTGCGGTGAACCAGTCcatgtaaatataaaatgagcTTAAATTAACTATTTCTAA

Function

GO:

id name namespace
GO:0043966 histone H3 acetylation biological_process
GO:0043981 histone H4-K5 acetylation biological_process
GO:0043982 histone H4-K8 acetylation biological_process
GO:0000123 histone acetyltransferase complex cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-928 Predicted to enable metal ion binding activity. Predicted to be involved in histone H3 acetylation; histone H4-K5 acetylation; and histone H4-K8 acetylation. Predicted to be part of histone acetyltransferase complex. Orthologous to human JADE3 (jade family PHD finger 3).

Ensembl:

ensembl_id ENSDART00000142119

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065195 lncRNA downstream 153552 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00065194 lncRNA downstream 870049 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00064099 lncRNA downstream 945399 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00065193 lncRNA downstream 1104651 36386292 ~ 36393495 (-) True XLOC_032984
TCONS_00065192 lncRNA downstream 1208272 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00064129 lncRNA upstream 249699 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065196 lncRNA upstream 633655 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00065197 lncRNA upstream 1260690 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00065198 lncRNA upstream 1260690 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00065199 lncRNA upstream 1260690 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064115 mRNA downstream 28371 37460269 ~ 37469775 (-) False XLOC_032999
TCONS_00064116 mRNA downstream 29175 37461476 ~ 37468971 (-) True XLOC_032999
TCONS_00064113 mRNA downstream 37968 37451341 ~ 37460178 (-) False XLOC_032998
TCONS_00064114 mRNA downstream 38387 37453680 ~ 37459759 (-) True XLOC_032998
TCONS_00064110 mRNA downstream 56626 37431169 ~ 37441520 (-) True XLOC_032995
TCONS_00064120 mRNA upstream 15055 37513911 ~ 37525683 (-) False XLOC_033001
TCONS_00064121 mRNA upstream 15743 37514599 ~ 37525879 (-) True XLOC_033001
TCONS_00064122 mRNA upstream 105112 37603968 ~ 37622576 (-) True XLOC_033002
TCONS_00064124 mRNA upstream 234752 37733608 ~ 37745508 (-) False XLOC_033004
TCONS_00064125 mRNA upstream 235461 37734317 ~ 37744441 (-) False XLOC_033004
TCONS_00064112 other downstream 51003 37447028 ~ 37447143 (-) True XLOC_032997
TCONS_00064111 other downstream 58776 37439255 ~ 37439370 (-) True XLOC_032996
TCONS_00064106 other downstream 728077 36769939 ~ 36770069 (-) True XLOC_032991
TCONS_00064105 other downstream 753895 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064104 other downstream 764320 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064123 other upstream 116510 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064130 other upstream 633655 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064131 other upstream 856906 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064134 other upstream 868240 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064135 other upstream 1098813 38597669 ~ 38597784 (-) True XLOC_033008

Expression Profile

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