RNA id: TCONS_00065193


Basic Information

Item Value
RNA id TCONS_00065193
length 1519
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id XLOC_032984
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36386292 ~ 36393495 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTTTATATCATGAACCACTGGATTTATGTTGCATATATGTAAGTACAGATACATATTTTAATACAGTAAAATCATTAATGTACGTACATCATTTGTCTTCACAAGCATTGGAAATGTAACAGATTTCCACTTGTAAATCATAAAAGTTATCCTTCTTTATGAGCAATGTCTGtttaaatggcataaatgttttgaaGTCCACTACAAAGGAGTCTGAAGTGTGtataaactataatataaataCCATTGAAAgcaaaatcaacttttgcaaATAAAAATTTTAGAAAGACATTTTTAAGCATTAAAAATCATTCAAAGTGAACGATGAAATGTTGGAAATGACAAGGCATAGAGGAGAAAATTTGGAATAAAACACTGTCAGAAACTATGCTTTTCTAACTACAGTTAGAGTTTTAGTACAACACAAATTTGCAATGCTGTTTGCAAATTTTTAGAGAAACAATGGATTTATAAAACACAGAATTACTGAACTATGTCTCTAAAGATATAACTTACAAACTTAGTTGCCCAACAAAGGTTTTAGGAAACTTTCTCCAGGATAGGGAATGCATTACTTTCAAGCACTTTGCTGCTCTGACTTAAAAGACAGAGATCAAATTATAGCATTGAATTTGCATTATCACAAGGTTGTCAAAAGGGGAGGAATTATTACCTACTAACTAGATCCTTTGATCAGACTTGGGGCCAGATTTTATAATATCTTATCTGCACTATATTGCAAATTCtcttttgacaaaaaaataaaaaaataaaaaaaataaaaaactcagtATACACTAAGACACAGCACAAGGTCAAAAATGACTgatgaaaagcatttttttctcctTACTGACCCTGTTGCATATATTGTAGGAATTTTCCTTTCAGACATTATTTATGcaagtatttaaatgaataatgcaACTTGATTAATTTATAGTCGGCAGAATAGCCAGTTGTCTGACTGTCAGAAAATACAGACTGATggacggacgaacggacggacagacggacagacagacagacagacaaataaataaataagtaaaaaaataaataaacaataaaacagtgAAGACTCATGAATGCATTTATGAGAGCAAACTAGCAAACAATGCAGAAAACAAGTCAAGTAAGTACAAGTAAGTGTAAGGTACGACATGTTTTGAAAGTCTATTATTATTGCATGacattttagtttaaataaattattaaatcacaTTAGAGCTGTAATTTTGGAGTCTGTATCTATCAAATTCGAGGGCAGACATCAACACATAGTCTGCACGGAGCATTTCAGGCTTTTCATTAGAGTACCACTAAAAATGTTTCAACTCAAGGTCTACAGCTAAAATGGATGCCTCACTTGTTGCTTCCTTTTCCCTAGTTGCCACTTTTGTCAGTGCTTCTGTTGGGCAAAAATTCCATTTCTTTCAATGTTAGAAATGTGCATACTATAGCCGAGAACAATACCCGAACAGAATCCCACTATCAGAGAGCCGTAAGGTGTAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064095 lncRNA downstream 95667 36287538 ~ 36290625 (-) False XLOC_032983
TCONS_00065192 lncRNA downstream 96418 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00064096 lncRNA downstream 96431 36287871 ~ 36289861 (-) False XLOC_032983
TCONS_00064751 lncRNA downstream 261402 36121319 ~ 36124890 (-) True XLOC_032981
TCONS_00064090 lncRNA downstream 471579 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064099 lncRNA upstream 158241 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00065194 lncRNA upstream 227815 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00065195 lncRNA upstream 948833 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00064129 lncRNA upstream 1355060 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065196 lncRNA upstream 1739016 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00064092 mRNA downstream 188240 36127505 ~ 36198052 (-) False XLOC_032982
TCONS_00064093 mRNA downstream 204177 36131031 ~ 36182115 (-) False XLOC_032982
TCONS_00064085 mRNA downstream 606944 35675784 ~ 35779348 (-) False XLOC_032978
TCONS_00064086 mRNA downstream 647456 35675874 ~ 35738836 (-) True XLOC_032978
TCONS_00064083 mRNA downstream 898879 35461631 ~ 35487413 (-) False XLOC_032977
TCONS_00064098 mRNA upstream 157588 36551083 ~ 36552844 (-) False XLOC_032986
TCONS_00064102 mRNA upstream 324490 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064101 mRNA upstream 324490 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064100 mRNA upstream 324490 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064103 mRNA upstream 326668 36720163 ~ 36795160 (-) False XLOC_032988
TCONS_00064094 other downstream 188528 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064091 other downstream 472785 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064062 other downstream 1447585 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064097 other upstream 85698 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 340214 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 350639 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064106 other upstream 376444 36769939 ~ 36770069 (-) True XLOC_032991
TCONS_00064111 other upstream 1045760 37439255 ~ 37439370 (-) True XLOC_032996