RNA id: TCONS_00064091


Basic Information

Item Value
RNA id TCONS_00064091
length 406
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_032980
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35910498 ~ 35914713 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgcccaggtttccaaagacgtggtaaagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccac

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0006396 RNA processing biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0048856 anatomical structure development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0030684 preribosome cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156888

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064750 lncRNA downstream 162700 35749066 ~ 35749921 (-) True XLOC_032979
TCONS_00065190 lncRNA downstream 822426 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064073 lncRNA downstream 873576 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065189 lncRNA downstream 955145 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA downstream 955145 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00065191 lncRNA upstream 194 35913701 ~ 35914464 (-) True XLOC_032980
TCONS_00064751 lncRNA upstream 207812 36121319 ~ 36124890 (-) True XLOC_032981
TCONS_00064095 lncRNA upstream 374031 36287538 ~ 36290625 (-) False XLOC_032983
TCONS_00064096 lncRNA upstream 374364 36287871 ~ 36289861 (-) False XLOC_032983
TCONS_00065192 lncRNA upstream 374379 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00064085 mRNA downstream 133273 35675784 ~ 35779348 (-) False XLOC_032978
TCONS_00064086 mRNA downstream 173785 35675874 ~ 35738836 (-) True XLOC_032978
TCONS_00064082 mRNA downstream 424441 35459369 ~ 35488180 (-) False XLOC_032977
TCONS_00064083 mRNA downstream 425208 35461631 ~ 35487413 (-) False XLOC_032977
TCONS_00064084 mRNA downstream 439698 35462347 ~ 35472923 (-) True XLOC_032977
TCONS_00064092 mRNA upstream 213998 36127505 ~ 36198052 (-) False XLOC_032982
TCONS_00064093 mRNA upstream 217524 36131031 ~ 36182115 (-) False XLOC_032982
TCONS_00064098 mRNA upstream 637576 36551083 ~ 36552844 (-) False XLOC_032986
TCONS_00064102 mRNA upstream 804478 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064101 mRNA upstream 804478 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064062 other downstream 973914 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 973928 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 973928 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 973935 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 1074322 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064094 other upstream 264838 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 565686 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 820202 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 830627 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064106 other upstream 856432 36769939 ~ 36770069 (-) True XLOC_032991

Expression Profile

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