RNA id: TCONS_00064094


Basic Information

Item Value
RNA id TCONS_00064094
length 818
RNA type processed_transcript
GC content 0.47
exon number 2
gene id XLOC_032982
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36127505 ~ 36198052 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCAACAGAGACTGAGAAGCTTGAGTGTCGCAGTCCGTTGGCGGATGTTAAATTGAGACGCGCGCGTTAACTGAATAGCGCGATCTGTTTCTAACTGTTTAGTGGATTTATAATCGACATTATTTGACTAAATGCGGTTATTTCGTCTTCAAGGAATAATTCAAAGCTCTACAGGGATGACCTTACCTTCGCTGTACGATGGGGGAGATTTGTCACCGAAGTTGGACTATAGTGAAGTAGCGCCAGTTTAAATATTTAGGTGCTGCCCATACGACCTTTCGTCCATTTTGTCTGTACGCCAAACAGTTTTCGTTACTTCCGTGGCTTTTTATGGTGATGTaacaaacaataattataaaaactgATTCAGCGCAGAATGGGACGTGAACGGATGAAGTTTCAACACTGAGGAGCGTTATGgtgagAGTTTGCGTGGCCGAAGCCATGCCAATCTTCAGTGCTGGGTGGTGGAGTGTGGTCCTGCACCAGAGCCTGTGCTGCTGAAGCCGTGTGCTGCTCCCCCCATGGCTCCATGGGAGCTGCTGCTGCTGACTTTCAGCCTCCACTGCTGGCTGACAAGCTCTGCCAGTTTAGCTGAAGAAGGCCCTGCAGGACCCTTGGACTGGCTTCTTTCTGACAAGGGCCCATTTCACCACTCACAGGAGTACACTGAATTTGTGGAGAGGAACCGTCAAGGATTTTCCACAAGATACAAGATCTACAGGTTAGTTGCACTTGAACTGAAGACTGTGTGATTTTATGCTTGCTGTGGTAgtcactgactacgtttacatggacatcattaatcgaatatttgc

Function

GO:

id name namespace
GO:0071300 cellular response to retinoic acid biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131119-53 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin; fin bud; gill; head; and muscle. Human ortholog(s) of this gene implicated in coronary artery disease and myocardial infarction. Orthologous to human BRINP3 (BMP/retinoic acid inducible neural specific 3).

Ensembl:

ensembl_id ENSDART00000155540

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064751 lncRNA downstream 53455 36121319 ~ 36124890 (-) True XLOC_032981
TCONS_00064090 lncRNA downstream 263632 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064088 lncRNA downstream 263636 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA downstream 263636 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00065191 lncRNA downstream 263881 35913701 ~ 35914464 (-) True XLOC_032980
TCONS_00064095 lncRNA upstream 89774 36287538 ~ 36290625 (-) False XLOC_032983
TCONS_00064096 lncRNA upstream 90107 36287871 ~ 36289861 (-) False XLOC_032983
TCONS_00065192 lncRNA upstream 90122 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00065193 lncRNA upstream 188528 36386292 ~ 36393495 (-) True XLOC_032984
TCONS_00064099 lncRNA upstream 353972 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00064085 mRNA downstream 398997 35675784 ~ 35779348 (-) False XLOC_032978
TCONS_00064086 mRNA downstream 439509 35675874 ~ 35738836 (-) True XLOC_032978
TCONS_00064082 mRNA downstream 690165 35459369 ~ 35488180 (-) False XLOC_032977
TCONS_00064083 mRNA downstream 690932 35461631 ~ 35487413 (-) False XLOC_032977
TCONS_00064084 mRNA downstream 705422 35462347 ~ 35472923 (-) True XLOC_032977
TCONS_00064098 mRNA upstream 353319 36551083 ~ 36552844 (-) False XLOC_032986
TCONS_00064102 mRNA upstream 520221 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064101 mRNA upstream 520221 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064100 mRNA upstream 520221 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064103 mRNA upstream 522399 36720163 ~ 36795160 (-) False XLOC_032988
TCONS_00064091 other downstream 264838 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064062 other downstream 1239638 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 1239652 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 1239652 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 1239659 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064097 other upstream 281429 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 535945 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 546370 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064106 other upstream 572175 36769939 ~ 36770069 (-) True XLOC_032991
TCONS_00064111 other upstream 1241491 37439255 ~ 37439370 (-) True XLOC_032996

Expression Profile

//