RNA id: TCONS_00064095


Basic Information

Item Value
RNA id TCONS_00064095
length 836
lncRNA type lincRNA
GC content 0.32
exon number 4
gene id XLOC_032983
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36287538 ~ 36290625 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttggTATTCTTCGGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0035282 segmentation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007379 segment specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139278

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064751 lncRNA downstream 162648 36121319 ~ 36124890 (-) True XLOC_032981
TCONS_00064090 lncRNA downstream 372825 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064088 lncRNA downstream 372829 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA downstream 372829 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00065191 lncRNA downstream 373074 35913701 ~ 35914464 (-) True XLOC_032980
TCONS_00065193 lncRNA upstream 95667 36386292 ~ 36393495 (-) True XLOC_032984
TCONS_00064099 lncRNA upstream 261111 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00065194 lncRNA upstream 330685 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00065195 lncRNA upstream 1051703 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00064129 lncRNA upstream 1457930 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00064092 mRNA downstream 89486 36127505 ~ 36198052 (-) False XLOC_032982
TCONS_00064093 mRNA downstream 105423 36131031 ~ 36182115 (-) False XLOC_032982
TCONS_00064085 mRNA downstream 508190 35675784 ~ 35779348 (-) False XLOC_032978
TCONS_00064086 mRNA downstream 548702 35675874 ~ 35738836 (-) True XLOC_032978
TCONS_00064082 mRNA downstream 799358 35459369 ~ 35488180 (-) False XLOC_032977
TCONS_00064098 mRNA upstream 260458 36551083 ~ 36552844 (-) False XLOC_032986
TCONS_00064102 mRNA upstream 427360 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064101 mRNA upstream 427360 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064100 mRNA upstream 427360 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064103 mRNA upstream 429538 36720163 ~ 36795160 (-) False XLOC_032988
TCONS_00064094 other downstream 89774 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064091 other downstream 374031 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064062 other downstream 1348831 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 1348845 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064097 other upstream 188568 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 443084 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 453509 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064106 other upstream 479314 36769939 ~ 36770069 (-) True XLOC_032991
TCONS_00064111 other upstream 1148630 37439255 ~ 37439370 (-) True XLOC_032996

Expression Profile

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