RNA id: TCONS_00064120


Basic Information

Item Value
RNA id TCONS_00064120
length 2760
RNA type mRNA
GC content 0.37
exon number 5
gene id XLOC_033001
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37513911 ~ 37525879 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGTGCTTCTTCTCCAAAAAATCGAGGAGGAAATCTCCCAAAAAAGACGCTGCTTTACCCACCGGGGACGAGAGCGCTACGGGCAATGACCTCGCCGAAACCAACAACACTGCGCTGGGCAGCAACAGCAACCAGGAGGCTCCAAAGCAATACAGCTGGGACAAACGAGAAAAGGTCGACCCCAAAGACTTTATGCTGACAGGCCTCAAGAATGAGACCGTGGGCAGGTTACCAGGCAAGCTCAACGGTCAGCAGTTTGTCATTCAGGACTGCGAAAACTGTAACATATTTGTGTTGGACCATTCGGCAACTATTACCATCGATGACTGTGTGAACTGCCGCATTGTGTTAGGTCCGGTCAAAGGCAGTGTGTTCTTCAGAGATTGTAAAGACATCAAATGCGTGGTGGCCTGTCAGCAGTTCCGCACGAGAGACTGCAAGAAAATGGACGTCTTTTTGTGCTGCGCCACCCAGCCCATAATCGAGTCTTCTACAGGCATGAAGTTTGGCTGCTTCCAGTATTACTACCCTGAGCTGGCTTTCCACTTTAAAGATGCAGGTCTCAGCATTTTTAACAACAACTGGAGCAATATTCATGACTTCACACCTGTCTCTGGAGAAACTAACTGGAGTCTCCTGCCAGAGGATGCTGTTGTCCTGGACCATGTGCCTCTTCCAGATCCTGAGTCAGAGTTCAAGTCTGTGAGAATTGCTACTGAAGCAGGTCGGAGTATAGTGCCTCTGACTAAAGGGAGCCGGCGAACAGAGAGCGAAGAGTCTTGTCTGTTTGTGTTCTTCGCTGGAGACTACACCACTGCTAATGCCCGCAAGCTCATCGATGAGGCAACTGCTAAAGGCTTTGTCCTGATTCAGACTAAAGAGGTTTCCATGCGCCCTGAGGATGTGAGCCGAGTGTTCCAGAATAATGCAGAGAGCCTTACTGAATGGATCACCAAAGGTCCAGTGGTAGCGCTTGAGCTGAATGGAGACGGTGTGGTGGAAGCGTGTCGATCCTTTGCCAATGAAGTGTTCAACGGAACACagCTGTTTGTTTCTGAGAGCAAAAATACATCCTCGCGTGATGTTGACAACTTTTTCAACTTTGCTGACATGCAGATGGGCCTGTGAAACTGGGGCAGAGGGTCAGCTCAATTTAACGTGGGTTCAAATTTTCTTGGTTTTGTCAATTTTGATACAGTATAATGAAATTACATCATATGTGATGCCACTGAGACCATTTAATGGGTTAAAACCACTATTCACTTTTTTTTCctccagaaaaaaaacagaaaattgtTCTAGGGTGGATCTGACAATTTGACATTTTCATGTTGATTATATTGACATATTGTCAGCGAGTTTATTTGGATCCAATCAAGAAGGCAAGTGCCTTTAGATAGAGTACTAGAACTAAAGTCTAATCAAACATTGCTGTGGACAATTTCATCGCTTATGCTGAAAATAATGAATTTGATTATATAGATATTTAttgaatttccttttttttcataaatgtataGCTGGAAATTGTTTTACTCTGTCTTGGCTGTATACAGTACGTCTCCTTTACTTAGTGTATAGTCATCATGCCTGTGTATATTTGTTAGATGTAAAAACAATATTGTTCAGATTTTGTCACATGCCTAAAAACATGAATTGtattgaattagatttttttatatgaccgatataaatgtattttattttacagttagcatagctttttatttgtatgtttttttcagtATTGTCTTGTTTTTCAAATGACATCTGTTTTTATTGTATAAGTTTTTACAGTAGCACTGTTCTGAAAAGAATGTAAATGCTGAAACTGATAGGTCGAATGTACTACTAAACAGGAGCATTAATCGTCTCCTTTACATTGTTCTATTTTTCTAGGATCATTTTAAAGAGCACAACAACTTTTCTGTGACCAGAATCATTTGTAcacttcaaaagaaaaaatagtgatttttttttttttcttctaaatgttcCTATTTGTACAAGACAGTTTTTTAGGGATGAATAATAACTGTGATTTGTCAATACAATCATACTGATCGAAAGTTGTCTCATCTTTTTTCCACATGCAAATAAGCACAACACTAAATGTGAATGTATTACGACAAATGCCAACTAGTGAATAGTTTTGTTAGTTGAGTACATATTTGCTCAGAGAAAGAGATTGTGAGTAACTGTAAGTGGTGTTGTGAAATGTTGTGGTTCTGAATTTTGACCGCATTGCTTTTataataatttctttaataataatCTCTTTCTGTCAGTAAAAAGTATTcaaatatcatgtttaaaaaaaacaaaaagagttaGAGTAGTTGTCTGatttgttgagcacaaaaaagTTGTATTTTCTTCAGGGGTCCAATATAAACATCAGGGGACAGGTTGAAATTAATAGTTTAATTCTGGTAGGACAGATTTTTACCTTGCTGGttataaaagaatcttaaaaatgCACAATATTAATCATTAAATCAGTTTTCTACCGTGCTAAAAACAAGAAGTGTTATGTTATATAAAGCTATgtgtataatacatttattttagtaaattccATGGAATGTTTGCTTTGGTATATATTGCAAAATGAGTCAAAATGAGATGCATTAAATGCGTTTCAAAccaattttgtgatttatgtgatataaaaaatataggtgaaataatgtatttaaatgtattcaaattatttttattctaaatatgaCTGACAAGTTTGTTTGGtagaaaaat

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0000902 cell morphogenesis biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0048793 pronephros development biological_process
GO:0042461 photoreceptor cell development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0015031 protein transport biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:1990075 periciliary membrane compartment cellular_component
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2795 Predicted to enable GTPase activator activity. Acts upstream of or within animal organ development; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and plasma membrane. Predicted to be active in cilium and periciliary membrane compartment. Is expressed in several structures, including fertilized egg; liver and biliary system; pleuroperitoneal region; sensory system; and trunk. Used to study retinitis pigmentosa 2. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 2. Orthologous to human RP2 (RP2 activator of ARL3 GTPase).

Ensembl:

ensembl_id ENSDART00000182707

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065195 lncRNA downstream 169317 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00065194 lncRNA downstream 885814 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00064099 lncRNA downstream 961164 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00065193 lncRNA downstream 1120416 36386292 ~ 36393495 (-) True XLOC_032984
TCONS_00065192 lncRNA downstream 1224037 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00064129 lncRNA upstream 222872 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065196 lncRNA upstream 606828 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00065197 lncRNA upstream 1233863 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00065198 lncRNA upstream 1233863 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00065199 lncRNA upstream 1233863 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064117 mRNA downstream 778 37478765 ~ 37513133 (-) False XLOC_033000
TCONS_00064118 mRNA downstream 14337 37479283 ~ 37499574 (-) False XLOC_033000
TCONS_00064115 mRNA downstream 44136 37460269 ~ 37469775 (-) False XLOC_032999
TCONS_00064116 mRNA downstream 44940 37461476 ~ 37468971 (-) True XLOC_032999
TCONS_00064113 mRNA downstream 53733 37451341 ~ 37460178 (-) False XLOC_032998
TCONS_00064122 mRNA upstream 78285 37603968 ~ 37622576 (-) True XLOC_033002
TCONS_00064124 mRNA upstream 207925 37733608 ~ 37745508 (-) False XLOC_033004
TCONS_00064125 mRNA upstream 208634 37734317 ~ 37744441 (-) False XLOC_033004
TCONS_00064126 mRNA upstream 208643 37734326 ~ 37743724 (-) False XLOC_033004
TCONS_00064127 mRNA upstream 208767 37734450 ~ 37744430 (-) True XLOC_033004
TCONS_00064119 other downstream 15055 37498146 ~ 37498856 (-) True XLOC_033000
TCONS_00064112 other downstream 66768 37447028 ~ 37447143 (-) True XLOC_032997
TCONS_00064111 other downstream 74541 37439255 ~ 37439370 (-) True XLOC_032996
TCONS_00064106 other downstream 743842 36769939 ~ 36770069 (-) True XLOC_032991
TCONS_00064105 other downstream 769660 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064123 other upstream 89683 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064130 other upstream 606828 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064131 other upstream 830079 38355762 ~ 38358080 (-) True XLOC_033006
TCONS_00064134 other upstream 841413 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064135 other upstream 1071986 38597669 ~ 38597784 (-) True XLOC_033008

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08067248_08072622.mRNA True 2647 mRNA 0.41 5 CI01000340 8066024 ~ 8072914 (-)