XLOC_033066 (p4htm)


Basic Information

Item Value
gene id XLOC_033066
gene name p4htm
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40730869 ~ 40744726 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064254
ATTGACGAATCGGACGTCGCGGGTGCAGGAGCAGTGCGTCGGAGATGCAGTTGTCAGGGGAATGGCGTCCCTCGAAAGTCCAACCACTTCGAGGAGTATAACCAGGCTTACAAATAAAACCTAATTATTATAAGCGGACACTACAAGATCATACAAACTGGGATTTTAAAGAGAATGAATTTCAAAATGGTGTTCCGACACAACCGCTCGTATGATAGCAGAAGCTGCGCAGTTGCTATAATCACGCGTCTCGATGTAAACAAGAGAGTGACAACTGAAAGTGCTGAGTGAGCCACAGACTGTCATGCTATTGcaagccggaggtacgtacgttTATACAAATAAAAGTCATAAAATATCATCCGTATATTAAAGCAGCTAGTTTTAATGAGTCTCTTTTATTCGTGTCGTTACTCATCTTGTTACAAATGTAGCCCTCTAGTAGATTAGCCATGACAGTTCACCATCTGGGTGTAATGCGTTATGTGCATCGGTTGAATACCAGCTTGTATAAAAGAACCTTAACTAGTGTATCCTAAACAGATTACTAAATGTTGTCTGGCAAAATGATGGAACCCCAGGACGACATTGAGGAGGATGACAGCCCATCAGCATCagcaccaccatcatcatcaccatcaccgTCATCCTCTCCACCACCCCGAGCTCTGCCCCGTCAGCGCACCTCACTGCAGAAGAGCAGCGTCTGCTCTCGCTCTTACTTCATGGTGGTGATGGTTTTCTTCCACGTTTACATCATAAATGTCATTGCACTGCTGCTGTATGTTCATTATAACAACGGCTCTAACGCGATCTCCGCAAACCGGGATTTCACAAGCAGTGACAGCAGCAGTCACAAAGTTACCGGAGCGTCAGACGCGCAGGCCACTGCCGACTCGGGCTTCCCTCGAAATATGTTTCTTCCCCGCATCGAAGGAATACGGGTGGGCCATGTCCAAAAAGTGTCACTGGTGTCAGGCAAAGTCCACGAGATGAAGACCCTCAGTCTAAAGCCTCTGCTGTTTGAGATCCCTGACTTCCTGTCGGAGGAGGAGTGTGCTGTAGTTGTGCGTTTGGCTCAGCTCAAGGGTTTGATGGAGAGTCAAGTCATGGTCCCCGAAGGTCAAGAAGAACTCGATCAGCAGCTCAACCTCAGTCCTGAGGAAATCTTCAATTTTCTTGACCTCAACCAAGATGGCCAGCTGCAACCTCATGAGATATTGACACATTCTCGAGTAAGAGATGGAATCTGGTTAACTTCTGAGAATCTTAAGGAAATTTATGACGGCCTGAAAGCTGATCTGGATGGAAATGGTCTCCTGAGTTTAGAGGAGTTTGGGCGTCTGAGAAGTGATGCTTTTCAGCGTTTTCTGCTTCAGCGCGGGGTGGAGAGGAGTCAGCTGGTGAGAAACAGCAGACATACTTGGCTCTATCAGGGTCAGGGAGCACATCAGGTTCTTCAAGACCTCCGCAAAAGAGTAACTCTTTTAACTCGACTGCCATCCTCTCTGGTGGAGTTAAGTGAGCCGCTTCAGGTGGTCCGCTATGAGCAGGGCGGTCATTACCACGCTCATCATGACAGCGGACCTGTGTATCCTGAAACTGCCTGCACACACACTCGCCTTGCTGCCAATACCACTTCTCCATTCCAGACGTCCTGCAGGTACATCACAGTTCTGTTTTACCTTAATAATGTTCAGGAAGGAGGCGAGACCACCTTTCCAGTTGCAGACAACAGAACTTATGAAGAAGCGTCTCTAATACAGAATGATGTGGATCTATTGGACACCAGGAAACATTGTGATAAAGGCAACCTGAGAGTGAAGCCTGTAAAGGGGACGGCGGTTTTCTGGTACAACTATCTCTCCGATGGTAGAGGTTGGGTGGGTGAGCAGGATGAGTATTCTCTTCATGGTGGCTGTGTGGTGACACAAGGGACTAAGTGGGTTGCCAATAATTGGATCAATGTGGATCCAGACTACCAGCGGCAGGCACGCTACCAACTGCTCGTTTCTCAACAAGAGTCACAAGAGCAAGAAGAACCGAACTCAGACCAGCACATAGAAGCTCACCAAgacctgtaaacacacacaaacacacgcaaatCCAGGTACGGCAGTGCACATATGTACACATTAACTTCCATGTTATGATCTACTACAATATATATAGTCATCCACTTTCTTCTTCACATCCAGATACAGTTCATTACCAGCAGAAAATCACTATACacattggtattggtggtttCCGAGGACACTTTTTAggtgtattatattttatactgtaaaaattgacTTGTCAAAAGACTTCAGTACAATTTTATCacattttgaattatgaggacacagtgTATGTCATTAACTACCTCcatagagtacaactaggtcaaattcccatgtcattatacatatttctgtccttgtaaaccatcaaaaccagtacacacacacacacaccctgaagCACTGACCTCAAACCACCAAAAACACATTGATCCTGGCTTGCACTTCctggcatacacacacacacacaaatgcacagtaTAGAAATGTAGCCCTAGCAACATTTCCTTGCATTCAGAATTGAAAGCTTTACTCAGCCTCCAGGGTTGGGTTGGATTCAGGGATACGCAGCCTGAGCTTTATGCAAATGTGAAAGACAATGCTACTGTTCCTAATGTAGATATTTGAaggtgttatttattttttcatgggAATGCAGCCATATTGGACAACTTTGTTTACATACTGATTGACACTCTACTGTACCTTCCAAAGGCTGTACACACCGCAGCTAATCATTAATGCAGTGATAGTCATTTGAAGCAATAGATGGTGATGGCATGGGTAGGATTTGTTTTTTACTCTGGCGGCCTCCTAAAACAGCTTTCTGTCAGTGCTAAAATAACTGCCGGAGGattttaaatgtacagtacatGGCCGGAGAGTGTTAAAAATACTTTTACTTACACTGACATTTGAATCAGCAAACACTTGAGGAACGTTATCTGCAGGGGCATTCAGCATTCACTAGTTGTAATATAAAGATTGTTTAACCTAGTCAGCCTCCATCTCTGCCAGGATGTTTCTTACACTTGTTTCTTCTAAGATATTCTTGAAGCATGTTGAACTTGCACAATCTTGTAATATTAgtttgaattttaattatttattttgtaatatattattgtttttttctgttatttgcaATGCATCCAAAGACTACCTGaagttaacttattttatttattatatgttggAACTGAATCACATTTGTTGCCCTTAAAATGCACAGAATCACTTtgttgaataaatgattaaaataaactgtaaagaccagtttttgttattaaaaacattttaaagacatgaaaacatttgttattctactacattttctttttcaaaagtaaaaattCATTTATGATTTACTATGCATACAAATTGGCATAAAAAGGTATGAAGTCCAGctggatttgaaattaaatgtcCATTAATCAACATAAAAGGGATCCAGAGAGGTGGTCAAAACCTTTGAAAGACCCGAAAGAGTGTGTTCACACTAGAAaagttgatattattatttaaatatgattgcTTTAATAGTGTGGGTTATTTGAATAAGTGTAAATGGACAAATTCCATTGcagtatatacattgtaaaagctttttttaatattcagggttacttttttaaaaaatgactgtgAAAACACAAAGCTAATCTGGATTAAATATGAACTGAACTACAACTATGAACACACTAAATCACTGCTGGTTTCCTTAGGATGTAGCCATTGGATTTAGAACCAGGTGCTTCAATTTGAGTAAAACAAAGCCTGTGGTAAGCACAActtgaaaatacataaaaaatcatGCAAAATACATTTTGCTCTATAGTTAATTACACAACCATATCAAAAACATGATTGTTAATTTGCTTATTTTGTTCTAATTGATAACTAGACAGGAATATTtaaatagacccttttcacatttctgggatTCTCAGTAGCAGAAAGCTTCATAGTTGGGTAACCTTAGAGAgtagtgaatgggagagtacaacaaatcatttttttaataattctatgtgctgaaaaaataaaagaaataactcTTCTATGGTGTTCAAAactttcagaaaaaagaaaaaaaaatatttgagacTGATGATGTCAGCCAGCAGATAGAATCAGTGgagtcaaatttactctcagccccatagactGCATTACAAACAACGGAAGTAGGATATACTACATACATACAGGCGTTTAAATGTTCatacgtttaaaaaaaacatctaaatattaaaaactttcaaggttTTTAGattatgatgactgttaaacCCGTCATAACagttgtaaaaagggtccattgtGAATGTGCACAGCTGTTAAAAAAACCAGTTATCTTTACCACAGATTTTATTTGACTCATAAAGTCCATCCTCTTTTTAGgtcgtgacgtatggaatacGGTTTCCAGGTccacttattttaatttaaaaaatggtcatTTATTAATAGCCACTGTTTAGTCGTATCACACATAAAAGTGAATTTCTTACAAAAATCATGGCGCACACAGCAGTCAATAGTAGTACTAGAAATAGCAGTcagacttgctgcatcacagacactaATCATAACTCAATCATCACTCACTGACCATCTGATATTAggcgcaaatatatatatatattatgatcatgattttcaaaagtattacagcactttgtaaacatttattagtaCCATTTGTTGAGGCTCCCTGTACAGTGGACCCGGAAGCTGCATTGCGTCATGACAGAGTTAACAAGTggatagaaaataaaatacaaacattttaagtacatttaaatgacaatGACATACTGGAAAACAAGAGGTAAGACATGCTTTGCAGTGTTGGGTAAAAGAAGTATTATATTTCTTTTTCCATTACATATGTAAAAGTGTTATTTTagctttttcattttaaagattaaGATAGACTtaagatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatttttttccccaacactgatgcaTTGCTACAGTCAACAGTTGAGTCAAATGCTGTTTGATATCCTATGAAAAGTTTTTGTCGTGTGAATCTTAAATACACTGCAAATGAGCATGCAGTACAAATCTTCTCTTATAGCCGAGTGCCACTCATATCCTGAAATGAGAAGATTGAAGTCATTTACATGatcatattcaatatatatatgtgtgtgatacTGGTCTTAGTAAACAATTACAGAACTTACCAGAGCGTTCTCATGGCCGTTGATGGTTGCAGCTCCATGATGCTTTACACAATACAGAACTGCATCATGTACAGTAGCAAAGACACAGGCCTCAGTGATGACATCAGAGAAGAAGCCGCCACGCTCCAGCTGTTTCATCACTAATTCTTGAGTAAAAACAATGCAGTTCAGATTAACATCAGATgaagtttacattaattttacattagattagtcagtaccaaagtcTAAACTGaaactaattaaactaaataacTGAAAAAAGGAGAATATGCCATATTttaggttgtatttttttatttgcaacatCCCATTTGAATTGAAATGTTTTTAGAAGAAAGGGTTTGTACAACAGGtttgcagggtttctgcaggtttcatcaagtcaaatgtaagactttttaagatgattatgaatgaaatttcagacttatccAGGGCTAAATTTTAAGGATATTTTCTAAAGGCCCAATAAGCAAATGCTTTTCAACAAACAGAAACTTTTCTGTAAAAAAGATCGACAAgctttaaaaattacaataaattaaatgtacagtACAACAGTTTGTCTGGGTCAGTGTCCTCACATATTATGGTCTATAAAAACATGGAgaactttttaaacaaatgttattgtaaggaagataattaaaccatattggtaaagAGAGTTATacataaaagttttattgagatgtattgttggtggtTGAATGTGTGTTGGCCTGATTGGGTATTTTTacatggacaaaaaaaaattaagaccagtttaaaatgatttaagacctacaagacaatgtTACAgaaaatttcaagagttcacacttagctgatgattctttataaagcttgtttggcttgctgtcccgggagagagccaagagctcataagatcctcgagcccggggctccctcctgtttgcaaggcgagaggggagtttgagctcaggtagatctcgagaactctctTGCTGTAGTAGcaaatgaacagatagtgattgcccttagagataactacttactagaagcatgtctatgatgccgatttggattagtcactTAACTTAGGTTGCATATTTTTAGACGGTAGGAGGAAACCGGAtgacccaggggaaacccatgtgagcatggggagaatgtgtaaactccgcacagaaacatcagctggcttggtaaggactagaaccagtgacgttcttgctgtgaggcaatagtgctaaccactgggccac
>TCONS_00064255
GAATCGGACGTCGCGGGTGCAGGAGCAGTGCGTCGGAGATGCAGTTGTCAGGGGAATGGCGTCCCTCGAAAGTCCAACCACTTCGAGGAGTATAACCAGGCTTACAAATAAAACCTAATTATTATAAGCGGACACTACAAGATCATACAAACTGGGATTTTAAAGAGAATGAATTTCAAAATGGTGTTCCGACACAACCGCTCGTATGATAGCAGAAGCTGCGCAGTTGCTATAATCACGCGTCTCGATGTAAACAAGAGAGTGACAACTGAAAGTGCTGAGTGAGCCACAGACTGTCATGCTATTGcaagccggagATTACTAAATGTTGTCTGGCAAAATGATGGAACCCCAGGACGACATTGAGGAGGATGACAGCCCATCAGCATCagcaccaccatcatcatcaccatcaccgTCATCCTCTCCACCACCCCGAGCTCTGCCCCGTCAGCGCACCTCACTGCAGAAGAGCAGCGTCTGCTCTCGCTCTTACTTCATGGTGGTGATGGTTTTCTTCCACGTTTACATCATAAATGTCATTGCACTGCTGCTGTATGTTCATTATAACAACGGCTCTAACGCGATCTCCGCAAACCGGGATTTCACAAGCAGTGACAGCAGCAGTCACAAAGTTACCGGAGCGTCAGACGCGCAGGCCACTGCCGACTCGGGCTTCCCTCGAAATATGTTTCTTCCCCGCATCGAAGGAATACGGGTGGGCCATGTCCAAAAAGTGTCACTGGTGTCAGGCAAAGTCCACGAGATGAAGACCCTCAGTCTAAAGCCTCTGCTGTTTGAGATCCCTGACTTCCTGTCGGAGGAGGAGTGTGCTGTAGTTGTGCGTTTGGCTCAGCTCAAGGGTTTGATGGAGAGTCAAGTCATGGTCCCCGAAGGTCAAGAAGAACTCGATCAGCAGCTCAACCTCAGTCCTGAGGAAATCTTCAATTTTCTTGACCTCAACCAAGATGGCCAGCTGCAACCTCATGAGATATTGACACATTCTCGAGTAAGAGATGGAATCTGGTTAACTTCTGAGAATCTTAAGGAAATTTATGACGGCCTGAAAGCTGATCTGGATGGAAATGGTCTCCTGAGTTTAGAGGAGTTTGGGCGTCTGAGAAGTGATGCTTTTCAGCGTTTTCTGCTTCAGCGCGGGGTGGAGAGGAGTCAGCTGGTGAGAAACAGCAGACATACTTGGCTCTATCAGGGTCAGGGAGCACATCAGGTTCTTCAAGACCTCCGCAAAAGAGTAACTCTTTTAACTCGACTGCCATCCTCTCTGGTGGAGTTAAGTGAGCCGCTTCAGGTGGTCCGCTATGAGCAGGGCGGTCATTACCACGCTCATCATGACAGCGGACCTGTGTATCCTGAAACTGCCTGCACACACACTCGCCTTGCTGCCAATACCACTTCTCCATTCCAGACGTCCTGCAGGTACATCACAGTTCTGTTTTACCTTAATAATGTTCAGGAAGGAGGCGAGACCACCTTTCCAGTTGCAGACAACAGAACTTATGAAGAAGCGTCTCTAATACAGAATGATGTGGATCTATTGGACACCAGGAAACATTGTGATAAAGGCAACCTGAGAGTGAAGCCTGTAAAGGGGACGGCGGTTTTCTGGTACAACTATCTCTCCGATGGTAGAGGTTGGGTGGGTGAGCAGGATGAGTATTCTCTTCATGGTGGCTGTGTGGTGACACAAGGGACTAAGTGGGTTGCCAATAATTGGATCAATGTGGATCCAGACTACCAGCGGCAGGCACGCTACCAACTGCTCGTTTCTCAACAAGAGTCACAAGAGCAAGAAGAACCGAACTCAGACCAGCACATAGAAGCTCACCAAgacctgtaaacacacacaaacacacgcaaatCCAGGTACGGCAGTGCACATATGTACACATTAACTTCCATGTTATGATCTACTACAATATATATAGTCATCCACTTTCTTCTTCACATCCAGATACAGTTCATTACCAGCAGAAAATCACTATACacattggtattggtggtttCCGAGGACACTTTTTAggtgtattatattttatactgtaaaaattgacTTGTCAAAAGACTTCAGTACAATTTTATCacattttgaattatgaggacacagtgTATGTCATTAACTACCTCcatagagtacaactaggtcaaattcccatgtcattatacatatttctgtccttgtaaaccatcaaaaccagtacacacacacacacaccctgaagCACTGACCTCAAACCACCAAAAACACATTGATCCTGGCTTGCACTTCctggcatacacacacacacacaaatgcacagtaTAGAAATGTAGCCCTAGCAACATTTCCTTGCATTCAGAATTGAAAGCTTTACTCAGCCTCCAGGGTTGGGTTGGATTCAGGGATACGCAGCCTGAGCTTTATGCAAATGTGAAAGACAATGCTACTGTTCCTAATGTAGATATTTGAaggtgttatttattttttcatgggAATGCAGCCATATTGGACAACTTTGTTTACATACTGATTGACACTCTACTGTACCTTCCAAAGGCTGTACACACCGCAGCTAATCATTAATGCAGTGATAGTCATTTGAAGCAATAGATGGTGATGGCATGGGTAGGATTTGTTTTTTACTCTGGCGGCCTCCTAAAACAGCTTTCTGTCAGTGCTAAAATAACTGCCGGAGGattttaaatgtacagtacatGGCCGGAGAGTGTTAAAAATACTTTTACTTACACTGACATTTGAATCAGCAAACACTTGAGGAACGTTATCTGCAGGGGCATTCAGCATTCACTAGTTGTAATATAAAGATTGTTTAACCTAGTCAGCCTCCATCTCTGCCAGGATGTTTCTTACACTTGTTTCTTCTAAGATATTCTTGAAGCATGTTGAACTTGCACAATCTTGTAATATTAgtttgaattttaattatttattttgtaatatattattgtttttttctgttatttgcaATGCATCCAAAGACTACCTGaagttaacttattttatttattatatgttggAACTGAATCACATTTGTTGCCCTTAAAATGCACAGAATCACTTtgttgaataaatgattaaaataaa

Function

symbol description
p4htm Enables 2-oxoglutarate-dependent dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to act upstream of or within regulation of erythrocyte differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110131-7 Predicted to enable procollagen-proline 4-dioxygenase activity. Acts upstream of or within glomerular basement membrane development and pronephric glomerulus development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Orthologous to human P4HTM (prolyl 4-hydroxylase, transmembrane).

Ensembl:

ensembl_id ENSDARG00000075209

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064254 False 6560 mRNA 0.38 9 40730869 40744726
TCONS_00064255 True 3103 mRNA 0.44 10 40734100 40744720

Neighbor

gene id symbol gene type direction distance location
XLOC_033065 kbtbd12 coding downstream 8389 40715637 ~ 40722480 (-)
XLOC_033064 si:ch211-157b11.12 coding downstream 17665 40707162 ~ 40713204 (-)
XLOC_033063 si:ch211-157b11.14 coding downstream 33284 40689357 ~ 40697585 (-)
XLOC_033062 CR450814.2 coding downstream 63406 40667347 ~ 40667463 (-)
XLOC_033061 NA coding downstream 69545 40659954 ~ 40661324 (-)
XLOC_033068 myhb coding upstream 711 40745437 ~ 40756138 (-)
XLOC_033069 h1-10 coding upstream 24791 40769517 ~ 40771813 (-)
XLOC_033070 CR450814.1 coding upstream 51172 40795898 ~ 40819766 (-)
XLOC_033071 eefsec coding upstream 77861 40822587 ~ 40832245 (-)
XLOC_033072 mustn1a coding upstream 96430 40841156 ~ 40842768 (-)
XLOC_033060 dre-mir-200c non-coding downstream 74581 40656204 ~ 40656288 (-)
XLOC_033059 dre-mir-141 non-coding downstream 74784 40656003 ~ 40656085 (-)
XLOC_033058 dre-mir-429b non-coding downstream 77631 40653129 ~ 40653238 (-)
XLOC_033074 NA non-coding upstream 111413 40856139 ~ 40864078 (-)
XLOC_033076 CR293534.1 non-coding upstream 201631 40946357 ~ 40946475 (-)
XLOC_033077 NA non-coding upstream 218960 40963686 ~ 40968341 (-)
XLOC_033085 NA non-coding upstream 706944 41451670 ~ 41452888 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09811189_09815649 P4HTM coding CI01000340 null 9810571 ~ 9815649 (-)