XLOC_033064 (si:ch211-157b11.12)


Basic Information

Item Value
gene id XLOC_033064
gene name si:ch211-157b11.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40707162 ~ 40713204 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064249
GGAAGTAAACTCCCGTGTCAACAGATTTTTGACACATCAAAACTTGCTTTCACGGGCTCTGCTAGATAACTCCAATGATTGCTGTGAAACaataaagagaatgaatgaatcctGTGCAAATGTTTCACTCTGTGAACCTGGGCCCCGTCATGTTCAGGAAAATGGTACAACTTTTTGTGTGCCCTGTGCCTCAGCAGACCAGGGGAATTCAACTTCACTTAACAGTACAAGAACTAATCAAATTCCAGTATCTTTAATCACAGTAATTGGTGGTCCAGGTGTAGCAGCTTCTGTGCTTCTGGGAACTCTACTCATTAGCCTTGGCCTCATCCTCTCTGTTGCATCCTTCTTTTACCTCAAGCGTTCCAACCGCCTCCCTGGAGTCTTCTACAGGCGCAATAAAGCTTTTATATTCCAACCAAGTGAGACGGCTGTTATGATTCCCGAAGCTTCATCTTCAGTTCGCAAGCCAAGATATGTGAGGAGGGAGAGGCCTTCAGCGACGTCAACATCCAATAGTGCTACCGTGGCAACAGGGGCAGTAACTAAGGTATACAACGTGTGACCAGCCTCCGAAGACCAGGTGTGAGGCCCCTTCTGTCCCAAGGCACTGTTTCCTTATAGGATTGTTcactttttctctttttattttggtgaaaacttccTCCTTATTCATGTAGGCTACGTGAGGAACTGCTCTGTCTTGATGACGTAGTCTTTTATGCTCCTttctttttagttttcttttcacCGATGTcagttatttatttctatttatatatttttcacacAAATTATCGTTTTTTTAAGAGACCAGGTGTTGCACTACTAGAGTATTTTTGATCGTTAAGCTGTTCAATTGAGTTCTTTATGAATTTTGTAACGTTTATATTTATTACCAGTATTTTTTGTGTGATATAGTACTTTTGAATCTCGTGACAACTGTAACTAGGCTCCAAAATAAGACTTCCACAGTTAAATTTGCATTTAAGCAGCTCTTCAAATCATatctaattaaaaaatatatatatacgaaatttttatttttgaaattctAACCTCAATGCCACAAACATTTGCTATATATTACCCTGTATGAGCATTGAAAACTCTCATAACTTGGGTTTCCATGTTAGCAGCATATTTATGTTATACCAGATAAAATATGTGTGCATGAAACAATCACTATATTCAACATGAAGCATCAGACCCGCACCAAAGAAGTTTGCCGGAAATGAATACACTCAAATTCGCTAGGCCTTAAAGTTGCAAACATGCTGTTAATACACAGTCTATACAGTAAGAATGGTATTACAAAAACTGTTGCCAAACTATTTACTTACCCAATACTTTCACTGTATAAAACAAAGTGCCATTATGAGAATgtgctaataaataaaaacctagTCACCTTTTTttgattttgtacatttttacaaaattagaAAGTAAAAGTATGAATACTTGGCGTGTATTATTTGGTAAATTTACGGTTGGAAAAAAGAGATCGTTGTTGTGTCATAAAGCGAGTGATGCACTGGTATTTCTGAGAAAGTCAGTtatcttttttactttattttgttgatGTTTATTGCAAATAGTGGCCTTTAATATGCCATATCATCCTCTATGcctatatgaatatatttatggtTTTCTGTGTAGTTCTCATTTGTTGTAATGGTTCTGTTTATTTAAAGCATTatgcttgttttttctacttgaTTTTAGGAGGGGggttaaaacattttgtaaaatggATAATTTTTAGTATGCTGGATTAATAAAAAGGATGGAATGTTTACTCAAGGTGATGGTAAATGATATTGTGGGTTTACATCAGTGATGCTGTTTTAAGAATATAACCACTTTTAACATTCGTTTATGTCATTTTATTGGCTGTTGTGCAGCAACTGGAAAGCATGTCAGTGGATTTTGTATATGAATTCTGTTTAGATGGATGctgttgactttttttatttaaatttttttgtatgcTTGTGTCAATGGAGTGAGTATTGATCATGTTGAATCATATTTGATGAAGATTTCAGtgtttacagaaataaaatattttgatttatgaGAAAAAA
>TCONS_00064250
GGCAGTGAGTTTTAATAATCAGGAAGTAAACTCCCGTGTCAACAGATTTTTGACACATCAAAACTTGCTTTCACGGGAGTAATCTCATCATGAGTAGAGCCTACTACATCATCAGTGCTGTTCTTTATGTGTTAAAAATTCCAGAGACCAAGGCTCTGCTAGATAACTCCAATGATTGCTGTGAAACaataaagagaatgaatgaatcctGTGCAAATGTTTCACTCTGTGAACCTGGGCCCCGTCATGTTCAGGAAAATGGTACAACTTTTTGTGTGCCCTGTGCCTCAGCAGACCAGGGGAATTCAACTTCACTTAACAGTACAAGAACTAATCAAATTCCAGTATCTTTAATCACAGTAATTGGTGGTCCAGGTGTAGCAGCTTCTGTGCTTCTGGGAACTCTACTCATTAGCCTTGGCCTCATCCTCTCTGTTGCATCCTTCTTTTACCTCAAGCGTTCCAACCGCCTCCCTGGAGTCTTCTACAGGCGCAATAAAGCTTTTATATTCCAACCAAGTGAGACGGCTGTTATGATTCCCGAAGCTTCATCTTCAGTTCGCAAGCCAAGATATGTGAGGAGGGAGAGGCCTTCAGCGACGTCAACATCCAATAGTGCTACCGTGGCAACAGGGGCAGTAACTAAGGTATACAACGTGTGACCAGCCTCCGAAGACCAGGTGTGAGGCCCCTTCTGTCCCAAGGCACTGTTTCCTTATAGGATTGTTcactttttctctttttattttggtgaaaacttccTCCTTATTCATGTAGGCTACGTGAGGAACTGCTCTGTCTTGATGACGTAGTCTTTTATGCTCCTttctttttagttttcttttcacCGATGTcagttatttatttctatttatatatttttcacacAAATTATCGTTTTTTTAAGAGACCAGGTGTTGCACTACTAGAGTATTTTTGATCGTTAAGCTGTTCAATTGAGTTCTTTATGAATTTTGTAACGTTTATATTTATTACCAGTATTTTTTGTGTGATATAGTACTTTTGAATCTCGTGACAACTGTAACTAGGCTCCAAAATAAGACTTCCACAGTTAAATTTGCATTTAAGCAGCTCTTCAAATCATatctaattaaaaaatatatatatacgaaatttttatttttgaaattctAACCTCAATGCCACAAACATTTGCTATATATTACCCTGTATGAGCATTGAAAACTCTCATAACTTGGGTTTCCATGTTAGCAGCATATTTATGTTATACCAGATAAAATATGTGTGCATGAAACAATCACTATATTCAACATGAAGCATCAGACCCGCACCAAAGAAGTTTGCCGGAAATGAATACACTCAAATTCGCTAGGCCTTAAAGTTGCAAACATGCTGTTAATACACAGTCTATACAGTAAGAATGGTATTACAAAAACTGTTGCCAAACTATTTACTTACCCAATACTTTCACTGTATAAAACAAAGTGCCATTATGAGAATgtgctaataaataaaaacctagTCACCTTTTTttgattttgtacatttttacaaaattagaAAGTAAAAGTATGAATACTTGGCGTGTATTATTTGGTAAATTTACGGTTGGAAAAAAGAGATCGTTGTTGTGTCATAAAGCGAGTGATGCACTGGTATTTCTGAGAAAGTCAGTtatcttttttactttattttgttgatGTTTATTGCAAATAGTGGCCTTTAATATGCCATATCATCCTCTATGcctatatgaatatatttatggtTTTCTGTGTAGTTCTCATTTGTTGTAATGGTTCTGTTTATTTAAAGCATTatgcttgttttttctacttgaTTTTAGGAGGGGggttaaaacattttgtaaaatggATAATTTTTAGTATGCTGGATTAATAAAAAGGATGGAATGTTTACTCAAGGTGATGGTAAATGATATTGTGGGTTTACATCAGTGATGCTGTTTTAAGAATATAACCACTTTTAACATTCGTTTATGTCATTTTATTGGCTGTTGTGCAGCAACTGGAAAGCATGTCAGTGGATTTTGTATATGAATTCTGTTTAGATGGATGctgttgactttttttatttaaatttttttgtatgcTTGTGTCAATGGAGTGAGTATTGATCATGTTGAATCATATTTGATGAAGATTTCAGtgtttacagaaataaaatattttgatttatgaGAAAAAA
>TCONS_00064251
GGAAGTAAACTCCCGTGTCAACAGATTTTTGACACATCAAAACTTGCTTTCACGGGTAAGTGCAGGTGTTAATTGTCACAAAACGTCTTATGTCGTCGGTAAACGAAACaataattgctactgttttaTTAAGAGAGTGATTAGCATCCTAGAAATTCTCATAGCAAGCTACAATAATTAGCCCGTTGCTCAGTAAACAGACTGTTGAAAAACTTGTTTGGCGGGGTAGTCATCATAGCTTGTTTATCATACTGTATGGATTTATAAATGGGGCTAAAACGTTAGTGATCTTAATggtaaaactatatatttttaataacgtTACGCCCATCGACTTAAACAGAAATCTCAGTTAACGTTATCATTGTGGAATTAGGGGCCAGTCGTGTTAAGCAATCAATGTCTTCAAAAAAAATGTGAAGGCTCCCTCTTGATGTTGTTctacatatacacaaatatataaacattttaatgacgTTATCAGAACGATTTACCTCCAACTGTGGTATTTTAGACCATAAAGATAACAGGCTTCAGATCCATATTGACTCCATCTAACCCACAGGAGTAATCTCATCATGAGTAGAGCCTACTACATCATCAGTGCTGTTCTTTATGTGTTAAAAATTCCAGAGACCAAGGTATCTTTTGTCTAATTTCACTCAGTTTGTGAGAGCAGTAATTAATGTGAAAACATTAATGTAGTTCCATGCTGTGAATTGAATGTATAATAATGTGCTAAGTTTGTTTCTGATGTGTCGTGTTTTTCAGGCTCTGCTAGATAACTCCAATGATTGCTGTGAAACaataaagagaatgaatgaatcctGTGCAAATGTTTCACTCTGTGAACCTGGGCCCCGTCATGTTCAGGAAAATGGTACAACTTTTTGTGTGCCCTGTGCCTCAGCAGACCAGGGGAATTCAACTTCACTTAACAGTAGTGGTCCAGGTGTAGCAGCTTCTGTGCTTCTGGGAACTCTACTCATTAGCCTTGGCCTCATCCTCTCTGTTGCATCCTTCTTTTACCTCAAGCGTTCCAACCGCCTCCCTGGAGTCTTCTACAGGCGCAATAAAGCTTTTATATTCCAACCAAGTGAGACGGCTGTTATGATTCCCGAAGCTTCATCTTCAGTTCGCAAGCCAAGATATGTGAGGAGGGAGAGGCCTTCAGCGACGTCAACATCCAATAGTGCTACCGTGGCAACAGGGGCAGTAACTAAGGTATACAACGTGTGACCAGCCTCCGAAGACCAGGTGTGAGGCCCCTTCTGTCCCAAGGCACTGTTTCCTTATAGGATTGTTcactttttctctttttattttggtgaaaacttccTCCTTATTCATGTAGGCTACGTGAGGAACTGCTCTGTCTTGATGACGTAGTCTTTTATGCTCCTttctttttagttttcttttcacCGATGTcagttatttatttctatttatatatttttcacacAAATTATCGTTTTTTTAAGAGACCAGGTGTTGCACTACTAGAGTATTTTTGATCGTTAAGCTGTTCAATTGAGTTCTTTATGAATTTTGTAACGTTTATATTTATTACCAGTATTTTTTGTGTGATATAGTACTTTTGAATCTCGTGACAACTGTAACTAGGCTCCAAAATAA

Function

symbol description
si:ch211-157b11.12 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1orf159 (chromosome 1 open reading frame 159).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-80 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1orf159 (chromosome 1 open reading frame 159).

Ensembl:

ensembl_id ENSDARG00000086336

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064249 False 2093 mRNA 0.35 8 40707162 40713183
TCONS_00064250 False 2190 mRNA 0.35 9 40707162 40713204
TCONS_00064251 True 1638 mRNA 0.39 6 40708291 40713183

Neighbor

gene id symbol gene type direction distance location
XLOC_033063 si:ch211-157b11.14 coding downstream 9577 40689357 ~ 40697585 (-)
XLOC_033062 CR450814.2 coding downstream 39699 40667347 ~ 40667463 (-)
XLOC_033061 NA coding downstream 45838 40659954 ~ 40661324 (-)
XLOC_033060 dre-mir-200c coding downstream 50874 40656204 ~ 40656288 (-)
XLOC_033059 dre-mir-141 coding downstream 51077 40656003 ~ 40656085 (-)
XLOC_033065 kbtbd12 coding upstream 2433 40715637 ~ 40722480 (-)
XLOC_033066 p4htm coding upstream 17665 40730869 ~ 40744726 (-)
XLOC_033067 arpc4 coding upstream 30163 40743367 ~ 40778294 (-)
XLOC_033068 myhb coding upstream 32233 40745437 ~ 40756138 (-)
XLOC_033069 h1-10 coding upstream 56313 40769517 ~ 40771813 (-)
XLOC_033058 dre-mir-429b non-coding downstream 53924 40653129 ~ 40653238 (-)
XLOC_033070 CR450814.1 non-coding upstream 82694 40795898 ~ 40819766 (-)
XLOC_033074 NA non-coding upstream 142935 40856139 ~ 40864078 (-)
XLOC_033076 CR293534.1 non-coding upstream 233153 40946357 ~ 40946475 (-)
XLOC_033077 NA non-coding upstream 250482 40963686 ~ 40968341 (-)
XLOC_033085 NA non-coding upstream 738466 41451670 ~ 41452888 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09785598_09788215 NA coding CI01000340 null 9785550 ~ 9788301 (-)