RNA id: TCONS_00064250


Basic Information

Item Value
RNA id TCONS_00064250
length 2190
RNA type mRNA
GC content 0.35
exon number 9
gene id XLOC_033064
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40707162 ~ 40713204 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGTGAGTTTTAATAATCAGGAAGTAAACTCCCGTGTCAACAGATTTTTGACACATCAAAACTTGCTTTCACGGGAGTAATCTCATCATGAGTAGAGCCTACTACATCATCAGTGCTGTTCTTTATGTGTTAAAAATTCCAGAGACCAAGGCTCTGCTAGATAACTCCAATGATTGCTGTGAAACaataaagagaatgaatgaatcctGTGCAAATGTTTCACTCTGTGAACCTGGGCCCCGTCATGTTCAGGAAAATGGTACAACTTTTTGTGTGCCCTGTGCCTCAGCAGACCAGGGGAATTCAACTTCACTTAACAGTACAAGAACTAATCAAATTCCAGTATCTTTAATCACAGTAATTGGTGGTCCAGGTGTAGCAGCTTCTGTGCTTCTGGGAACTCTACTCATTAGCCTTGGCCTCATCCTCTCTGTTGCATCCTTCTTTTACCTCAAGCGTTCCAACCGCCTCCCTGGAGTCTTCTACAGGCGCAATAAAGCTTTTATATTCCAACCAAGTGAGACGGCTGTTATGATTCCCGAAGCTTCATCTTCAGTTCGCAAGCCAAGATATGTGAGGAGGGAGAGGCCTTCAGCGACGTCAACATCCAATAGTGCTACCGTGGCAACAGGGGCAGTAACTAAGGTATACAACGTGTGACCAGCCTCCGAAGACCAGGTGTGAGGCCCCTTCTGTCCCAAGGCACTGTTTCCTTATAGGATTGTTcactttttctctttttattttggtgaaaacttccTCCTTATTCATGTAGGCTACGTGAGGAACTGCTCTGTCTTGATGACGTAGTCTTTTATGCTCCTttctttttagttttcttttcacCGATGTcagttatttatttctatttatatatttttcacacAAATTATCGTTTTTTTAAGAGACCAGGTGTTGCACTACTAGAGTATTTTTGATCGTTAAGCTGTTCAATTGAGTTCTTTATGAATTTTGTAACGTTTATATTTATTACCAGTATTTTTTGTGTGATATAGTACTTTTGAATCTCGTGACAACTGTAACTAGGCTCCAAAATAAGACTTCCACAGTTAAATTTGCATTTAAGCAGCTCTTCAAATCATatctaattaaaaaatatatatatacgaaatttttatttttgaaattctAACCTCAATGCCACAAACATTTGCTATATATTACCCTGTATGAGCATTGAAAACTCTCATAACTTGGGTTTCCATGTTAGCAGCATATTTATGTTATACCAGATAAAATATGTGTGCATGAAACAATCACTATATTCAACATGAAGCATCAGACCCGCACCAAAGAAGTTTGCCGGAAATGAATACACTCAAATTCGCTAGGCCTTAAAGTTGCAAACATGCTGTTAATACACAGTCTATACAGTAAGAATGGTATTACAAAAACTGTTGCCAAACTATTTACTTACCCAATACTTTCACTGTATAAAACAAAGTGCCATTATGAGAATgtgctaataaataaaaacctagTCACCTTTTTttgattttgtacatttttacaaaattagaAAGTAAAAGTATGAATACTTGGCGTGTATTATTTGGTAAATTTACGGTTGGAAAAAAGAGATCGTTGTTGTGTCATAAAGCGAGTGATGCACTGGTATTTCTGAGAAAGTCAGTtatcttttttactttattttgttgatGTTTATTGCAAATAGTGGCCTTTAATATGCCATATCATCCTCTATGcctatatgaatatatttatggtTTTCTGTGTAGTTCTCATTTGTTGTAATGGTTCTGTTTATTTAAAGCATTatgcttgttttttctacttgaTTTTAGGAGGGGggttaaaacattttgtaaaatggATAATTTTTAGTATGCTGGATTAATAAAAAGGATGGAATGTTTACTCAAGGTGATGGTAAATGATATTGTGGGTTTACATCAGTGATGCTGTTTTAAGAATATAACCACTTTTAACATTCGTTTATGTCATTTTATTGGCTGTTGTGCAGCAACTGGAAAGCATGTCAGTGGATTTTGTATATGAATTCTGTTTAGATGGATGctgttgactttttttatttaaatttttttgtatgcTTGTGTCAATGGAGTGAGTATTGATCATGTTGAATCATATTTGATGAAGATTTCAGtgtttacagaaataaaatattttgatttatgaGAAAAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-80 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1orf159 (chromosome 1 open reading frame 159).

Ensembl:

ensembl_id ENSDART00000153702

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065212 lncRNA downstream 45838 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 48062 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065210 lncRNA downstream 78001 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065209 lncRNA downstream 78040 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064236 lncRNA downstream 133930 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065213 lncRNA upstream 142935 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065214 lncRNA upstream 142935 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065215 lncRNA upstream 147092 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065216 lncRNA upstream 250482 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 313024 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064248 mRNA downstream 9577 40689357 ~ 40697585 (-) True XLOC_033063
TCONS_00064241 mRNA downstream 49509 40647788 ~ 40657653 (-) False XLOC_033057
TCONS_00064242 mRNA downstream 55218 40647795 ~ 40651944 (-) False XLOC_033057
TCONS_00064238 mRNA downstream 123909 40578219 ~ 40583253 (-) False XLOC_033054
TCONS_00064252 mRNA upstream 2433 40715637 ~ 40722480 (-) False XLOC_033065
TCONS_00064253 mRNA upstream 4612 40717816 ~ 40722200 (-) True XLOC_033065
TCONS_00064254 mRNA upstream 17665 40730869 ~ 40744726 (-) False XLOC_033066
TCONS_00064255 mRNA upstream 20896 40734100 ~ 40744720 (-) True XLOC_033066
TCONS_00064256 mRNA upstream 30163 40743367 ~ 40778294 (-) False XLOC_033067
TCONS_00064247 other downstream 39699 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064244 other downstream 49490 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064246 other downstream 50874 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064245 other downstream 51077 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064243 other downstream 53924 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064261 other upstream 49553 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064263 other upstream 82694 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064277 other upstream 233153 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 367093 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1696253 42409457 ~ 42418108 (-) False XLOC_033096

Expression Profile

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