CI01000340_09785598_09788215


Basic Information

Item Value
gene id CI01000340_09785598_09788215
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9785550 ~ 9788301 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09785598_09788215.mRNA
ACCTCCAATTATGGCATTTTAGAACATAAACATAATGGGCTTTGGATGCATATTGACTCCATCTAACCCACAGGAGTAATCTCATCATGAGTAGAGTCTACTACATCATCAGTGCTGCTCTTTTTGTGTTAGAAATTCCAGAGACCAAGGCTCTGCTAGAAAACTCCAATGACTGTTGTGAAAGAATAAAAAGAATGAATGAAACCTGTGCAAATATTTCACACTGCGATCCTGGGCTCCTTCAAGTTCAGGAGAACAGTACAATCTTTTGTGTGTCCTGTGACTCAACAGAACAGGGGAATTCAACTTCATTTAACAATACTGGTCCAGGTGTAGTGGCCTCTGTCCTTCTAGGAACTCTACTGATCAGCCTGGGCCTCATCCTCTCGGTTGCATCATTCTTTTACCTTAAGCGTTCCAACCGCCTCCCTGGTGTCTTCTACGGGCGCAATAAGGCTTTTATATTCCAACCAAGTGAGACGGCTGTCATGATTCCTGAAGCTACATCTTCAGGTATGGGAAATTTGAACTACTTGATCTGTATGTTGAATTTAATCAAAGTTCCAAAGAGGTGGTGTATCCTAGTTCCAACTGTGCTAAATTTCATTGGCAAAACATCTATTGGGAATATCTGATTAATAACAACTTGTAGTAAAAGCAGCACGCTCTGTTTAGCATATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09785598_09788215.mRNA True 683 mRNA 0.41 6 9785550 9788301

Neighbor

gene id symbol gene type direction distance location
CI01000340_09779573_09780250 NA coding downstream 3498 9779279 ~ 9782052 (-)
CI01000340_09772435_09775402 NA coding downstream 10148 9772238 ~ 9775402 (-)
CI01000340_09744311_09747075 PPIL1 coding downstream 38243 9743572 ~ 9747307 (-)
CI01000340_09702982_09703952 TSPO coding downstream 80790 9702969 ~ 9704760 (-)
CI01000340_09640461_09646025 CRBN coding downstream 139525 9639816 ~ 9646025 (-)
CI01000340_09794255_09797190 KBTBD12 coding upstream 5636 9793937 ~ 9797689 (-)
CI01000340_09811189_09815649 P4HTM coding upstream 22270 9810571 ~ 9815649 (-)
CI01000340_09817874_09828387 MMYHEMB1, MYH3, MYH1, MYH8, MYHB, MYH13 coding upstream 29493 9817794 ~ 9828988 (-)
CI01000340_09833384_09843244 MMYHEMB1, MYHB, MYHM86-1 coding upstream 45002 9833303 ~ 9843625 (-)
CI01000340_09847205_09851609 BRAFLDRAFT_215305, ARPC4 coding upstream 58501 9846802 ~ 9851962 (-)
G491970 NA non-coding downstream 18976 9765435 ~ 9766574 (-)
G491946 NA non-coding downstream 92179 9691608 ~ 9693371 (-)
G491938 NA non-coding downstream 160322 9624884 ~ 9625228 (-)
G491875 NA non-coding downstream 177906 9605977 ~ 9607644 (-)
G491933 NA non-coding downstream 187449 9597631 ~ 9598101 (-)
G491978 NA non-coding upstream 66605 9854906 ~ 9855304 (-)
G491980 NA non-coding upstream 69970 9858271 ~ 9858545 (-)
G491983 NA non-coding upstream 78748 9867049 ~ 9867353 (-)
CI01000340_09898618_09904814 RFT1 non-coding upstream 107461 9898618 ~ 9904814 (-)
G491992 NA non-coding upstream 169845 9958146 ~ 9958381 (-)
G491712 NA other downstream 985973 8799201 ~ 8799577 (-)
G489511 NA other downstream 3458178 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3564908 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4460406 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 5126489 4598714 ~ 4627447 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 233591 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 568883 10356758 ~ 10359856 (-)
G493109 NA other upstream 1885445 11673746 ~ 11677994 (-)
G493266 NA other upstream 2278876 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2823915 12577435 ~ 12625758 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033064 si:ch211-157b11.12 coding NC_007117.7 CM002890.2 40707162 ~ 40713204 (-)