XLOC_003307


Basic Information

Item Value
gene id XLOC_003307
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12522770 ~ 12523029 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008394
gccagggccgaatttttgtcccagtccgcccctgactgggaggctgaggctgcggatcgcttgagctcagggcttctggACTGCAGTGGACTATGTCGATCGGGTGCCCGCACTAAGTTCGGTATCAATATGGTGCTCCTGGGTGAGCTTGGGACCGCCAGGTCGTTAAAGGAGGAGTGAACCGGCCGATCAGTAGTGGGATCGTGCCTGTGAATAGACACTGCAGTTCAGCCTGAgcgacacagagagacgcagacttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008394 True 260 lncRNA 0.58 1 12522770 12523029

Neighbor

gene id symbol gene type direction distance location
XLOC_003304 NA coding upstream 28593 12493872 ~ 12494177 (+)
XLOC_003302 NA coding upstream 55710 12466766 ~ 12467060 (+)
XLOC_003284 si:ch211-156l18.7 coding upstream 338227 12175162 ~ 12184543 (+)
XLOC_003282 NA coding upstream 355980 12166486 ~ 12166790 (+)
XLOC_003280 si:ch211-156l18.8 coding upstream 430592 12052791 ~ 12092178 (+)
XLOC_003319 NA coding downstream 195080 12718109 ~ 12718402 (+)
XLOC_003320 ap1s2 coding downstream 196915 12719944 ~ 12728353 (+)
XLOC_003321 rbb4l coding downstream 221546 12744575 ~ 12770546 (+)
XLOC_003322 NA coding downstream 259186 12782215 ~ 12785059 (+)
XLOC_003323 rtel1 coding downstream 288877 12811906 ~ 12859263 (+)
XLOC_003306 BX000700.25 misc upstream 5541 12516933 ~ 12517229 (+)
XLOC_003305 BX000700.11 misc upstream 19923 12502551 ~ 12502847 (+)
XLOC_003303 BX000700.1 misc upstream 47068 12475442 ~ 12475702 (+)
XLOC_003301 BX000700.13 misc upstream 81818 12440656 ~ 12440952 (+)
XLOC_003300 BX000700.15 misc upstream 90505 12431978 ~ 12432265 (+)
XLOC_003308 BX000700.26 misc downstream 13255 12536284 ~ 12536580 (+)
XLOC_003309 BX000700.4 misc downstream 19010 12542039 ~ 12542334 (+)
XLOC_003310 CABZ01022569.4 misc downstream 44958 12567987 ~ 12568283 (+)
XLOC_003311 CABZ01022569.5 misc downstream 55503 12578532 ~ 12578828 (+)
XLOC_003312 CABZ01022569.3 misc downstream 70542 12593571 ~ 12593867 (+)
XLOC_003278 NA non-coding upstream 619260 11891240 ~ 11903510 (+)
XLOC_003276 NA non-coding upstream 646640 11839827 ~ 11876130 (+)
XLOC_003329 CR847923.1 non-coding downstream 628890 13151919 ~ 13152385 (+)
XLOC_003332 NA non-coding downstream 670694 13193723 ~ 13194597 (+)
XLOC_003341 CR555295.2 non-coding downstream 1294540 13817569 ~ 13817684 (+)

Expression


Co-expression Network