XLOC_033144 (capza1a)


Basic Information

Item Value
gene id XLOC_033144
gene name capza1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 48322250 ~ 48347724 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064406
CAAATTATTATTTGTCTTCAAACTAATAACTTGAAAAACATTAATAGCAACTTTTCTGATCAAAGAAATAAGAGAATAGATACAAGTCTGCTAAATTATAACACATTGTATATAATTTCCATTCAAGCTGCGTGACACAAAGTCCAGGAAGCAATCTTCTAGAACCAAACTTAACGTAAAGATGTAATTTTGTGCTCTTTTGTCAGGTTTATGATTGTTTTCCCGTGATGCAGTTTGACAGGGCAGGTCCAGTTGAGCCAAGATGGCGGACTTTGAGGAACAGCTTTCCGACGATGAGAAGGTCCGCATTGCTGCAAATTTTGTCATTCATGCGCCCCCTGGAGAGTTTAATGAAGTCTTCAATGATGTGCGGCTACTGCTCAATAATGACAATCTGCTCAGGGAAGGGGCGGCTCATGCCTTTGCCCAGTATAACATGGATCAGTTCACACCTGCTAAACTTGATGGAAGTGAAGATCAGGTTTTGATCACAGAGCATGGAGATCTTGGCCACGGCCGATTCTTTGACCCTCGTAAGAAACAGTCGTTCAAGTTCGACCACCTGAGGAAAGAGGCGAGTGAAGCTCAGTCGTATGAGGGCGAGGCGGCGCTCAGGCCGTGGAGAGATGCTGTAGATGAGGCTCTGAGGGCGTACGTTAAAGAACATTACCCCAGCGGAGTCTGCACTGTTTATGGAAAAACTATAGATGGACAGAAAACCATCATTGCCTGTATTGAGGGTCATCGATTTCAGCCTCAAAATTTCTGGAATGGCCGCTGCCGATCGGAGTGGAAGTTCTCCATTTCTCAGGCCACCGCTCAGGTGGTGGGAGTGCTGAAGATCCAGGTTCATTACTATGAGGATGGAAACGTGCAGCTGGTCAGCCATAAGGATGTGCAAGACTCTCTTGTCATCTCTACTGAGGTACAGACTGCCAAGGAGTTTGTCGAGATCATTAAAAACGCTGAAAATGAGTATCAGACGGCCATCAGCGAGAACTACCAGACCATGTCTGATACCACCTTCAAGGCCTTACGTCGGCAGCTTCCAGTCACCCGCACCAAGATCGACTGGAACAAGATCCTTAGCTACAAGATCGGCAAAGAGATGCAGAACGCTTAGACACACGGCATGCACGGCTCCGCTCCTGCTCGCGACACAAGCAAAGAGACAAGCTGCAGAGGGCCCGTATCTAAACCTGAATCCAGGGCAGGGCCAAGGCCAGAAGGTCCTCCGGAAGTGTGCTAAAAATGTGTCtgtccttttttttgtttttgttttgtttgttttccagaAGCCACAGTTTGACCTCAGCTGAAGAGACTGCCTCCTTTTCTGTATCGTAGGAGGACTGCAAGCTTGTTTTAATGGGTTTAGCAAAGGTTTTTTGCTGTTGAACAAAATACCTCCCACGACACCAGTGTACAGCATCACAAATGTCCCCTTAAATCACTTGATCAGCGCTCCCCATTCTTGACGCACTGAACGTTTTATTGCACAAAGCCCATATGATCAATCGAGtctattttgtttactttttttactttagcAACTTTACACTCCAAAGTTTTGCTCTTGATGTCAAGTCATACGTAAAAACGACCCATCAAGACTCTCtgactagttaaaaaaaaaaaaaaaaaaaaagacaccagTTTTGTTCTCCAGTGTAATATTTGGTCTATTTAAGAAGCATTGCTGTAAGGTGCCATCAGTTGAATGTGCTGTCAGAGAGGGTTGTGCCAAAGTGAGCATTGTATTTGTACAGTAAGTCATTTCAGGTTGCTGTTCTGTGTGGAAACGGTCCCATCATTGTACTCTGGTGTCTAAGAatggtatatttatatatatactgtatgcagTTACACAAATATTTGTTACCCCTCACTTCAGCCTCTTACCCTAGCTTTTATTGCGAAATATTTTTTACGAAATGTAAGAACAAAAATTATCCCAGAGGAATAAATGATTTGCACCAAACCGAGTATGGATTGTCGttgttttttgtcattacatATTGTAAcacctttttaatattagcatattagtcataatattaaataatatgtttcactcaaaagtgaaatatgtacattttccCTGATGCCAATTTAATTActgattattttcattattagatTATGCATTGATTCTGATATTGCTTTTTCAGATTGATAaacattcatcatcatcatcatgattatAGTAGATTTACTTAATATTATCCTTTTAATTTGTTCATACACGTATACTAAATAAATGCAagcttccacacaattcattcatgttgtccaagCACAaattgattattcattcattcattttctaccgcttttccggggctgggtcacgagggcagcagtcttaggagagaaccccagacttccctctccccagacacttcctccagctcctctggggggatcctgaggcattcccaggccagccgagagacatagtccctccagcttgTCTTGGGTCTTTCCTGAGGCcttctcccggtgggacatgcctggaacacctccctaggtaggcgtccaggaggcatccaaaaacAGATGCcaaagccacctcagctgacttctctcgatgtggagttGCAGctgctctactccgagctcctcaccctgtcgaCAAGAGTActccctgccaccctgcgaaggaaactcattttggccacttgtatccgagatcttgtcctttcggtcatgacccaaagctcacaAATCGATCAAGTTTACTAAATTGTTcttaaaaatttaagtggattgaacatgaaacaattaagttgtccgaAAAATATTGAAAGAATTGTCATTTTAAGTGCTTTGAACATGCAGCAAAAAAATTTTATGTGTGTACTTAATAtccagcattttaaaac
>TCONS_00064407
GATGCAGTTTGACAGGGCAGGTCCAGTTGAGCCAAGATGGCGGACTTTGAGGAACAGCTTTCCGACGATGAGAAG

Function

symbol description
capza1a Predicted to enable actin filament binding activity. Predicted to be involved in actin cytoskeleton organization and barbed-end actin filament capping. Predicted to act upstream of or within actin filament capping. Located in Z disc. Orthologous to several human genes including CAPZA1 (capping actin protein of muscle Z-line subunit alpha 1).

GO:

id name namespace
GO:0051693 actin filament capping biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0030018 Z disc cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5237 Predicted to enable actin filament binding activity. Predicted to be involved in actin cytoskeleton organization and barbed-end actin filament capping. Predicted to act upstream of or within actin filament capping. Located in Z disc. Orthologous to several human genes including CAPZA1 (capping actin protein of muscle Z-line subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000034240

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064406 False 2885 mRNA 0.42 9 48322250 48347724
TCONS_00064407 True 75 mRNA 0.53 1 48347424 48347498

Neighbor

gene id symbol gene type direction distance location
XLOC_033143 st7l coding downstream 4688 48290125 ~ 48317562 (-)
XLOC_033142 slc2a1b coding downstream 227908 48068695 ~ 48094342 (-)
XLOC_033141 NA coding downstream 260591 47979305 ~ 48061659 (-)
XLOC_033140 RAP1GAP coding downstream 368421 47869397 ~ 47953829 (-)
XLOC_033139 lrig2 coding downstream 481785 47809755 ~ 47840465 (-)
XLOC_033145 CU469362.1 coding upstream 32521 48380245 ~ 48381223 (-)
XLOC_033146 rhoca coding upstream 34973 48382697 ~ 48418021 (-)
XLOC_033147 ppm1j coding upstream 77642 48425366 ~ 48473694 (-)
XLOC_033148 CU137649.1 coding upstream 264310 48612034 ~ 48612150 (-)
XLOC_033149 NA coding upstream 567144 48914868 ~ 48949515 (-)
XLOC_033138 AL929512.1 non-coding downstream 719535 47602599 ~ 47602715 (-)
XLOC_033135 CABZ01055240.1 non-coding downstream 1165834 47156302 ~ 47156416 (-)
XLOC_033123 CU041346.1 non-coding downstream 2012239 46294361 ~ 46310011 (-)
XLOC_033122 BX005101.2 non-coding downstream 2094018 46228117 ~ 46228232 (-)
XLOC_033152 NA non-coding upstream 753155 49100879 ~ 49104192 (-)
XLOC_033155 BX569793.1 non-coding upstream 963184 49310908 ~ 49322532 (-)

Expression


Co-expression Network