XLOC_033147 (ppm1j)


Basic Information

Item Value
gene id XLOC_033147
gene name ppm1j
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 48425366 ~ 48473694 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064410
GTGTACATTCACTGGCTGGTCGGCTGAGAGTGCTATAGCATAGAGCGGCGCTTCAGCACTGACATCTTCCGTGCTATAGGCGGATATATAAGCCTCTCGGGTGATGATACACACTCTGCAGGGAGAGGATTTTTTCGACGAGGAAAACATTCTCTTTCAAATCGTCACATGGGGTCAATCGCTTCCTGCATCGCGACTGAACTGCTGTGCGCTTTTGTGCGTTTCGTTTCTGCCTCTTGACTCGTGTAGGTTTCTGTCGTTGCGATTACCGTGCCGCTGATGTCACAAATTTTACAGCGATGATAAGCAAAGTTAAAAATGCCATGTCCTCGCTGGTGGGCGGAATTATCCCGCACGGACACCACCATCAGCAGCAACACGGCTCGGCGCAGAACGGCGGAACGGACGGACTCCCGCCGCGCTTCCCCTACAGCAGACCCGAGTTTCTGGACCTGACACCGGAGCTGCTGCAGTACTCCACCGAGCACGCGTCCAGACCGGTCATCACGCTCAAGAGGGACAGTAGGCTGCCCTGGAGGACGGGATACGCCGAGGTGATAAATGCCGGGAAGAGCATGCTGAATGAAGACCAGGCAGCCTGCGAGGTGCTGTACGTGAGGAAGATGAGCAGCAAACAACAGCGCTGCTCCATGTTACTGGAGGAAAGCGGGGACACAACAGGAATTCCCATGCACTTTTGGGGAGTGTTTGATGGTCACGCCGGCTCTGGTGCTGCTCTCATGGCCTCCAAACTCCTCCAGAGGATCATTCGGGACCGGCTCTGTGACGTCGCTCATCTCCTGGAAAACCACAACAGTCCTCCGCCGATCTGCCTGGCCAAAAACGGGAGCCCGTTCCAGGCGGAGGGCAAGAAAGGAGCCTGTCTGGACGGAGAAGAGCAGGATGCAGGGCTGCCGGACGAGCCGCGCTTCCACATGGAGAAGGACATCAGTGTGGAGAGTCTGGTCATGGGCATCATAGAGACAGCGTTCAGACAGATGGATGACCTAATAGAGAAGGAGAAAGAGTCTTACAGCATCTCCGGTGGCTGTTGTGCCTTGGTTGCAATCCACTTGATGGGGAAACTCTACGTAGCAAATGCTGGAGACAGCAGAGCCATAATTGTCCGCAACAGTGAGGTCATCCCCATGTCCACTGAATTCACTCCAGAAAGCGAAAGACAGCGACTGCAGTACCTGGGCTTCCTCAAACCAGAGCTGCTTGGGAATGAGTTTACACATATTGAATTCCCCAGACGAATCCAACACAAGGAACTCGGCAAGAAGATGCTCTTCAGAGACCACACCATGACTGGCTGGGCATATAAGACAATTATAGAAGACGACCTCAAGTTCCCGTTGATTTATGGGGAAGGGAAAAAGGCTCGTGTCATGGCTACTATTGGAGTGACGCGTGGTTTAGGAGATCACGACCTGAAAGTGTACAACTCCAACATTTATATCAAACCCTTCCTGTCCTGCTGTCCAGAAGTTAAGGTGTACAACATCTCTGAGCACAAACACGGGTCTGATGATGTCCTGGTCATGGGTAGTGATGGACTGTGGGACGTTACAGCTGATAGAGATGTTGCTGACGCAGTATCAACTTTCCTGTCCAGCCGTGAGCCCAATGATCCTTTAAGGTACACTCTAGCAGCACAAGACCTTCTGATGCGCTCGCGGGGTGTGCTGAAGGAGCGAGGCTGGCGGCTGCCCAATGAGAGACTCGGCTCAGGCGATGACATCACCGTGTTTGTCATCCCATTGGCCGGCCCAGAGTTAGAAACATGACCAGGTCGGTCCGCCTTCACTGGACAAGCACACCAGGACACGTCCCTGGCTCCATCCCAGAGAAAGGGCTAGGAAAAACCAAGAAAAATACATCTTCAATCCGTCAGAAAACTCGGGACACGAGAGAGACTTTAAACGCAAACTTCCCCTCGTCCTCCTTACTTCTCCTCCGAGTAAATATCATCAAGATGTGAGGTGACATTATCAAAGTGCCATTCCTCTCGCTCTCCATCTCCTTTCTGATTTGTCGAACGCAGCCTCTGCAAAGTCAGTACGGGACGGGAGGGAAACGTTTGAGTATTCTTTAACATCCGTGGGCCGTTTGAATCTGAATCTCAGTGTGGCACTGGAATActgcttaataaaaataaaatcatagcCCTGACGGCGAGGGAAATAAAAACCGAAGCACTTTATATGTAGCAGAATTCATCGGAGCTGTAATTTAAACCGCTAATTATATTTCTGAACTGTTTTGTGAGGGACTGTCCAAAGAAGGTTTAAGGTTTTCTATAGCAAAATGCAATCAGAAACAATGATGGGCATTTGCTGTGAATGCAAAGGggttttatttgttcttttcaGCTGTTTTGGTTTTATGGAAGCAATGCAAATGCCGATATTCTTGGACTGTACAATATATAAAACTACTCATTTTTCTCTACATCTCCAGGAAGACAGTTTTTCACTCTGAATAAAATGGGTTGGGTAAAGTtgagtaaaatatggacaaattgAGTGGCtggatttttacatttcattaaaaaGAATAACCCGGCCATttagtttgttcatattttacacatCGTTTTGGAGTGTACAAATAACCTATATTATATTTCCAATTTGTTCTGACCGTTCAAGGAATGTTTCCATTGGTTTTCTTAACAACAGTAACATGACAAGATAATCATTTGCTGTGaatgcagtttttttgtttgttaatttcagCTGTTTTGGTTCTATTGAAGCAATGCAAATGTCGATATTCttgaaatatacaatatataaaactACTCCTTTTTCTCTTCTCCTCCAGAAAAACGTTTTCACTCTGGAAAAAAATGggttgtgtaaaaaatatgcacaAACCCAATGGTTGGatttaaatttttcatttaaaagatGAACCCATCTACagagtttgttcatatttgacacatttgtttttggactgtataaataacttaagacatgtacactcaaaaaatgctgttaaaacaacccaggctcattttggaTACATACCCtgttatacatttttggagagcgcaaaatatgtc
>TCONS_00064411
ATGATAAGCAAAGTTAAAAATGCCATGTCCTCGCTGGTGGGCGGAATTATCCCGCACGGACACCACCATCAGCAGCAACACGGCTCGGCGCAGAACGGCGGAACGGACGGACTCCCGCCGCGCTTCCCCTACAGCAGACCCGAGTTTCTGGACCTGACACCGGAGCTGCTGCAGTACTCCACCGAGCACGCGTCCAGACCGGTCATCACGCTCAAGAGGGACAGTAGGCTGCCCTGGAGGACGGGATACGCCGAGGTGATAAATGCCGGGAAGAGCATGCTGAATGAAGACCAGGCAGCCTGCGAGGTGCTGTACGTGAGGAAGATGAGCAGCAAACAACAGCGCTGCTCCATGTTACTGGAGGAAAGCGGGGACACAACAGGAATTCCCATGCACTTTTGGGGAGTGTTTGATGGTCACGCCGGCTCTGGTGCTGCTCTCATGGCCTCCAAACTCCTCCAGAGGATCATTCGGGACCGGCTCTGTGACGTCGCTCATCTCCTGGAAAACCACAACAGTCCTCCGCCGATCTGCCTGGCCAAAAACGGGAGCCCGTTCCAGGCGGAGGGCAAGAAAGGAGCCTGTCTGGACGGAGAAGAGCAGGATGCAGGGCTGCCGGACGAGCCGCGCTTCCACATGGAGAAGGACATCAGTGTGGAGAGTCTGGTCATGGGCATCATAGAGACAGCGTTCAGACAGATGGATGACCTAATAGAGAAGGAGAAAGAGTCTTACAGCATCTCCGGTGGCTGTTGTGCCTTGGTTGCAATCCACTTGATGGGGAAACTCTACGTAGCAAATGCTGGAGACAGCAGAGCCATAATTGTCCGCAACAGTGAGGTCATCCCCATGTCCACTGAATTCACTCCAGAAAGCGAAAGACAGCGACTGCAGTACCTGGGCTTCCTCAAACCAGAGCTGCTTGGGAATGAGTTTACACATATTGAATTCCCCAGACGAATCCAACACAAGGAACTCGGCAAGAAGATGCTCTTCAGAGACCACACCATGACTGGCTGGGCATATAAGACAATTATAGAAGACGACCTCAAGTTCCCGTTGATTTATGGGGAAGGGAAAAAGGCTCGTGTCATGGCTACTATTGGAGTGACGCGTGGTTTAGGAGATCACGACCTGAAAGTGTACAACTCCAACATTTATATCAAACCCTTCCTGTCCTGCTGTCCAGAAGTGAGTATAGTGTACAACATCTCTGAGCACAAACACGGGTCTGATGATGTCCTGGTCATGGGTAGTGATGGACTGTGGGACGTTACAGCTGATAGAGATGTTGCTGACGCAGTATCAACTTTCCTGTCCAGCCGTGAGCCCAATGATCCTTTAAGGTACACTCTAGCAGCACAAGACCTTCTGATGCGCTCGCGGGGTGTGCTGAAGGAGCGAGGCTGGCGGCTGCCCAATGAGAGACTCGGCTCAGGCGATGACATCACCGTGTTTGTCATCCCATTGGCCGGCCCAGAGTTAGAAACATGA

Function

symbol description
ppm1j Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Orthologous to human PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0003824 catalytic activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-091230-9 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Orthologous to human PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J).

Ensembl:

ensembl_id ENSDARG00000074690

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064410 False 3073 mRNA 0.47 10 48425366 48473694
TCONS_00064411 True 1494 mRNA 0.54 10 48426649 48473395

Neighbor

gene id symbol gene type direction distance location
XLOC_033146 rhoca coding downstream 7345 48382697 ~ 48418021 (-)
XLOC_033145 CU469362.1 coding downstream 44143 48380245 ~ 48381223 (-)
XLOC_033144 capza1a coding downstream 77642 48322250 ~ 48347724 (-)
XLOC_033143 st7l coding downstream 107804 48290125 ~ 48317562 (-)
XLOC_033142 slc2a1b coding downstream 331024 48068695 ~ 48094342 (-)
XLOC_033148 CU137649.1 coding upstream 138340 48612034 ~ 48612150 (-)
XLOC_033149 NA coding upstream 441174 48914868 ~ 48949515 (-)
XLOC_033150 si:ch211-105j21.9 coding upstream 587383 49061077 ~ 49063085 (-)
XLOC_033151 slc5a8l coding upstream 589595 49063289 ~ 49078702 (-)
XLOC_033152 NA coding upstream 627185 49100879 ~ 49104192 (-)
XLOC_033141 NA non-coding downstream 363707 47979305 ~ 48061659 (-)
XLOC_033138 AL929512.1 non-coding downstream 822651 47602599 ~ 47602715 (-)
XLOC_033135 CABZ01055240.1 non-coding downstream 1268950 47156302 ~ 47156416 (-)
XLOC_033123 CU041346.1 non-coding downstream 2115355 46294361 ~ 46310011 (-)
XLOC_033155 BX569793.1 non-coding upstream 837214 49310908 ~ 49322532 (-)
XLOC_033163 NA non-coding upstream 1286661 49760355 ~ 49771639 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006855 NA coding CM030134.1 CM030134.1 22881514 ~ 22928405 (-)