XLOC_033151 (slc5a8l)


Basic Information

Item Value
gene id XLOC_033151
gene name slc5a8l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49063289 ~ 49078702 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064414
ACTTCAGAGGACTTTTCAGGAGAACATCACGTCTGACCGGTGTGGCATCGGCTATATAACGGTCtaaaatctctctctttttttttaatcatgccGGGCTCTGGAGGTCCAGTTGCGACGTTCTCCGTCTGGGACTATGTGGTGTTTGCTGGCTTGATTCTTGTTGCAGCAGGCATTGGTTTGTTTCAATCATTTCGTGGACGTAAGGAGGCAAGCAGTGATGAGTTTCTACTGGGGGGCCGTCAGATGACTGCGGTGCCTGTGGCTTTGTCTCTAACGGCTAGTTTTATGTCTGGCATCACTGTTATTGGCACTCCTGCCGAGGCGTACCTGTATGGCACACCATTCTGGCTCTTCTTCATCTCCTACGCCATCATGTCCACCATCAGTGCTGAGATCTTTGTGCCATTGTTCTACCGGCTGAACATCACCAGCACATATGAGTACTTGGAAATGCGTTACAACAAGCTCATCAGAGTGATTGGAACCAGCATGTATATTATTCAAACCGCTTTATACACAGGCATGGTTATCTTTGCACCTGCACTCGCACTTAATCAGATTACTGGTCTGGATCTGTGGGGAGTGTTAGTGGCAACGGGGGCTGTCTGCATTATCTACTGCACCCTGGGAGGGCTGAAGGCAGTGATTTGGACAGACGTGTTTCAGATGATCATCATGTTGGGTGGTTTTGTGGCTGTTATCGCTCGCGGGGCGGTTCTGCAGGGAGGACTGGGGAGGGTCTGGAATGACAGCTTCTATGGAGGACGCCTGGAGACATTCAGCTTTGACCCTGACCCTCTGAGGCGTCACAGTTTTTGGACAATCGTTGTTGGTGGCAGTTTGATGTGGGCATCCATGTACTCCATCAACCAATCACAGGTCCAGCGCTATATTTCCTGCCGGACAATGACTCATGCCAAACTATCTCTGTATGTGAACATGGTGGGATTGTGGGTGACAGTGAGTTTGGCTATGATGTCTGGTCTCACCATGTACTCCATCTATAAAGACTGTGATCCTTTCACTAATAAAGACGTAGGAGCCACGGACCAGCTCCTTCCTTATCTAGTGATGGACATCCTGGCAGATTTCCCAGGACTGCCAGGTCTGTTCGTGGCTGCAGCTTACAGTGGGACATTAAGTACGGTGTCGTCGAGTATCAACGCTCTTGTGGCTGTGACAGTGGAAGACTTCATGAAACCTGCATGGCCTTCACTGACAGAACGACAGCTGTCCTGGATCAACATGGGCATGAGTGTGTTCTATGGCGCTGTTTGCATTGGCATGGCTGGTGTTGCCTCCATGATGGGAAATATACTGCAGGCAGCTCTGTCCATATTTGGTATGATCAGCGGGCCTCTTCTGGGTCTATACATGCTGGGCATGTTCTTCCGCTGCGCAAACTCCACTGGAGGTTTAGCTGGTTTGGCTTCTGGCTTGGCAATAACGCTGTGGGTGGGGATTGGAGCTCAGTTATATCCTCCTTTGCCAGAGAAGACCCTCAGGCTTCCCTTGAGTGTGGAAGGATGTGTTGCTCTGAACACAAGCGAAACCACCACTATGACACCATTCAGCACAGTCCTGCAAACCACAACTCCACAGCCTAGACCAGCTTTGGCAGACAACTGGTATTCTCTGTCATATCTGTATTTCTCTCCTGTTGGCATAATTGTGACCATGTTCATCGGACTAATAGTTAGTGCAATCTCAGGTGGCTGTAAGCAGAAGAAGGTTCGACCTGAGCTCTTTATCAGCAAATCAGATCTCATTTGCTTCAGATGTAAAAAATCAGACTCCGAGGTGTCAGACCTAAttgagactaagccaaaagataTTCAGGGTCTGGACAGTCCAGTTTTCTATGACAATGAAATTGTACTGAAAGAGAAAGACCAGCAGGAGAAGATCACAAAGCTTTAAATGTAACATAAAACCATTTTGCATATGATGTAAATAGTAAATTATAACTGTtttatagatatatgtatatatgcatgtggAAATTGCTAAATTATGATAATGCATCACAAGAGAAGAGAAGCAATAAATGAATagtaaatatttctatttttaggCAAGTGTTCTAAATGATATTATAGGGGCTTGCATAAATGCTAAATTCTATGATTTTCCTGATCAAGTATGAAATAGTTTGCCcctcaatattttgttttatgctttgtattaaatctgttttgaaataaaaattgatGAACGAC
>TCONS_00064415
ACTGTTTCTGATTTACCTGAAAGTGTCAGTACTAGACACTGATTCAACACCAATGGGAAActttttaagctttaaaaaaacaaaagcaaacctCACTACAGTACCAGGAACTGAGGAGTCTGACATGACCTGCGATGATGAAACGTACTTGGAAATGCGTTACAACAAGCTCATCAGAGTGATTGGAACCAGCATGTATATTATTCAAACCGCTTTATACACAGGCATGGTTATCTTTGCACCTGCACTCGCACTTAATCAGATTACTGGTCTGGATCTGTGGGGAGTGTTAGTGGCAACGGGGGCTGTCTGCATTATCTACTGCACCCTGGGAGGGCTGAAGGCAGTGATTTGGACAGACGTGTTTCAGATGATCATCATGTTGGGTGGTTTTGTGGCTGTTATCGCTCGCGGGGCGGTTCTGCAGGGAGGACTGGGGAGGGTCTGGAATGACAGCTTCTATGGAGGACGCCTGGA

Function

symbol description
slc5a8l Enables secondary active monocarboxylate transmembrane transporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; male organism; nervous system; neurocranial trabecula; and pleuroperitoneal region. Orthologous to human SLC5A8 (solute carrier family 5 member 8).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061110-98 Enables secondary active monocarboxylate transmembrane transporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; male organism; nervous system; neurocranial trabecula; and pleuroperitoneal region. Orthologous to human SLC5A8 (solute carrier family 5 member 8).

Ensembl:

ensembl_id ENSDARG00000003697

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064414 False 2222 mRNA 0.45 15 49063289 49078263
TCONS_00064415 True 477 mRNA 0.47 5 49071096 49078702

Neighbor

gene id symbol gene type direction distance location
XLOC_033150 si:ch211-105j21.9 coding downstream 204 49061077 ~ 49063085 (-)
XLOC_033149 NA coding downstream 113774 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 coding downstream 451139 48612034 ~ 48612150 (-)
XLOC_033147 ppm1j coding downstream 589595 48425366 ~ 48473694 (-)
XLOC_033146 rhoca coding downstream 645268 48382697 ~ 48418021 (-)
XLOC_033152 NA coding upstream 22177 49100879 ~ 49104192 (-)
XLOC_033153 tspan2a coding upstream 28346 49107048 ~ 49159207 (-)
XLOC_033154 ngfb coding upstream 90718 49169420 ~ 49215827 (-)
XLOC_033155 BX569793.1 coding upstream 232206 49310908 ~ 49322532 (-)
XLOC_033156 rplp2 coding upstream 430103 49508805 ~ 49510553 (-)
XLOC_033145 CU469362.1 non-coding downstream 682066 48380245 ~ 48381223 (-)
XLOC_033141 NA non-coding downstream 1001630 47979305 ~ 48061659 (-)
XLOC_033138 AL929512.1 non-coding downstream 1460574 47602599 ~ 47602715 (-)
XLOC_033163 NA non-coding upstream 681653 49760355 ~ 49771639 (-)
XLOC_033167 BX629346.2 non-coding upstream 839552 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding upstream 841234 49919936 ~ 49921857 (-)

Expression


Co-expression Network