XLOC_033150 (si:ch211-105j21.9)


Basic Information

Item Value
gene id XLOC_033150
gene name si:ch211-105j21.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49061077 ~ 49063085 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064413
GTGGAAAAAGACTCGAGCAGGTGGGGGGAGGGTAATAACTGCTGCGAAGCACTTCCTGCTTATACTACAACAGTTTGTTTCAGCTTACAGctgACAGCAATTGCAACAGTCATGGGTGTGTTTACTTTTCGACATTTGGTATGGGGCCAACTAATCCTACTTACATTAGTCTTAAATAAAATAACGGATGCACAACAGACCCATGAGTCACTGAAGAATGCAACAACAGCTCCACCTCTGAATGCAACAGGAAACCACACAGCAAACAATGCCTCAAATGCATCCAGCAATTCAGTATACAGTAATAATACAACAACTCAAAGCAGCTCGACAACCCAGATGACCCCTACTGTCTCCACGAACAATACTTCAGGAACCACCCTGAGCAATTTGACAGTCACAGCATCAGCAGAACACCCAACTACAACAGAAAATGATAAGGTCACATCTTCAACAACCACCACCACCAATTTAACAGCAGTCGCTTTCACAAACAGCACGGAAAAGGCTACATTGTTAAGCACGAAACCAGTGACCGAAACAACAGCGATAACTTACACAGTTCCAAACAGCACACATTCTGTCATTGACTCTCAAGCAGGTCTGAATCGTTCAGAGCAGTCTCTGACCATTTTTTTCAGCGTTCTCCTTGGTCTAATAGTTTTGGTAACTCTGGTACACTTTGTGTACAAGTTCAGCAGGAGCAAAGAAAGAAGTATCCAATATACTCATCGCCGTCTCCAGAATGATGATACAGGTGAGCCATTTGCAGTGGCAGATGACACAATGGTCATTTCAGGAGGACTCTATGACGGCCCTCAGATTTACAATCCCACCATGACAGTCCAGAACGAGGAAGAATTCCAGACAGACGCATATGGATTTGCTTCCAGACCCACTCAGTTCCGCTTAGAGTTTCTGAGAGAGGATCAAGACAAAGCACTCGACCATGAGACCTCCACCTTTCAGACATTCCAAGCACAAGACCAAGAGCCTTGAGATCTC

Function

symbol description
si:ch211-105j21.9 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-499 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097845

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064413 True 1005 mRNA 0.45 4 49061077 49063085

Neighbor

gene id symbol gene type direction distance location
XLOC_033149 NA coding downstream 111562 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 coding downstream 448927 48612034 ~ 48612150 (-)
XLOC_033147 ppm1j coding downstream 587383 48425366 ~ 48473694 (-)
XLOC_033146 rhoca coding downstream 643056 48382697 ~ 48418021 (-)
XLOC_033145 CU469362.1 coding downstream 679854 48380245 ~ 48381223 (-)
XLOC_033151 slc5a8l coding upstream 204 49063289 ~ 49078702 (-)
XLOC_033152 NA coding upstream 37794 49100879 ~ 49104192 (-)
XLOC_033153 tspan2a coding upstream 43963 49107048 ~ 49159207 (-)
XLOC_033154 ngfb coding upstream 106335 49169420 ~ 49215827 (-)
XLOC_033155 BX569793.1 coding upstream 247823 49310908 ~ 49322532 (-)
XLOC_033141 NA non-coding downstream 999418 47979305 ~ 48061659 (-)
XLOC_033138 AL929512.1 non-coding downstream 1458362 47602599 ~ 47602715 (-)
XLOC_033163 NA non-coding upstream 697270 49760355 ~ 49771639 (-)
XLOC_033167 BX629346.2 non-coding upstream 855169 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding upstream 856851 49919936 ~ 49921857 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_14121598_14122814 NA coding CI01000340 null 14121467 ~ 14122814 (-)