XLOC_033157 (rps26l)


Basic Information

Item Value
gene id XLOC_033157
gene name rps26l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49520124 ~ 49526510 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064428
CTTTTAATAATCCAAATAGCTTGGAAAAAAGTGTACTATTAATAAATGATAcgtttaaaatacatttctacaTCTTACAAATTTCTTATACTTAAGAGCAAAACAAATCACGCAATTCTCACCTTTGCTAGCAtgttatattgtaataataatcttAATTTTTATATTGTGTGTCGTGACTTTTAGGCTGCCTTCGCCGTAGCCCCACCACTGTATCTATCCGCGGTAAACTAGTTCCTTGAACAAATAAATTAGCCTCCGTGTCACATAACGAGATATATCTtaattgtatgtaaacttttaaACCGTATTCTTGCAGTAAACGTTTATAACACTCCATCACATCGTATACATGCAATATTTTCCCCAAGCGAAAACTTTTGTTGTAAACGAAAGACTTTTACTTCCGGTTTGCCTTTTCCGGTCCTCTTTCCAGCCTCCCGTTCAAGATGACTAAGAAAAGAAGGAACAACGGCCGTGCAAAGAAGGGTCGTGGTCATGTCCAGCCCATCCGCTGCACCAACTGCGCCCGCTGCGTCCCCAAAGACAAGGCCATCAAGAAGTTCGTCATCAGGAACATTGTGGAGGCCGCCGCAGTGAGGGACATCTCAGAGGCCAGCGTGTTCGACTCGTACGTGTTGCCCAAGCTCTACGTGAAGCTGCATTACTGCGTCAGCTGTGCCATCCACAGTAAAGTGGTGAGGAATAGATCCCGCGAGGCTCGCAAGGACCGAACACCACCTCCTCGATTCAGGCCTAGTGGTGCTGCACCCAGAGCTCCACCAAAGCCCATGTGAATCAGTTCATCTTCACATCCTGTGCATTTTCATGCAGAAAAATAAAACGGAAAATATCTGAAACAGATCCAggtgtttgtgctgtttttatagTTTGTTTGCTTGTGTTACTGCTCTGTGGGTTGAGTTTGAGGAGCTCAGTCATGTTTAATCATccatacattttttaatgttaccaTTCATTGTTATTATGACTGATAAAACATCTCTCATCACTGTATATTTAATTTCTGAACATCTGTTATCAGTTTATAAACTGCTGGCCTGAATAGAGCACTCGCTTTGGCACAAATCAGTTTCATATTTTTTACACCAGTATGAAGTTTtgatattttacaaattaaattaaatgcagtcagttttataaaatatatacattaaattaaaagcaCATCTTTAAAGTAATATGAAATATTGTtctttaattgaataatttatttgatttttttaattgatttataaaGAACTGTTGAAATTACAGTATTTAGGTCAAGCACAGTGCAAGTAACTAATACATATAGCAATAATCCCTTAATTTACTTCTCTGGATAAGTAATTACAGCAACTGGTTACTCGAGAAGGGTCTAgttcataggtctcaaactcaattccttgagggctgcagctctgcagttttgcttcaACTAT

Function

symbol description
rps26l Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit.

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003729 mRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1706 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit.

Ensembl:

ensembl_id ENSDARG00000030408

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064428 True 1445 mRNA 0.38 4 49520124 49526510

Neighbor

gene id symbol gene type direction distance location
XLOC_033156 rplp2 coding downstream 9571 49508805 ~ 49510553 (-)
XLOC_033155 BX569793.1 coding downstream 197592 49310908 ~ 49322532 (-)
XLOC_033154 ngfb coding downstream 304297 49169420 ~ 49215827 (-)
XLOC_033153 tspan2a coding downstream 360917 49107048 ~ 49159207 (-)
XLOC_033152 NA coding downstream 415932 49100879 ~ 49104192 (-)
XLOC_033158 FO704848.1 coding upstream 2504 49529014 ~ 49537646 (-)
XLOC_033159 ppp4r1l coding upstream 14768 49541278 ~ 49547680 (-)
XLOC_033160 BX323459.2 coding upstream 58951 49585461 ~ 49655235 (-)
XLOC_033161 BX323459.1 coding upstream 101921 49628431 ~ 49634787 (-)
XLOC_033162 apcdd1l coding upstream 123660 49650170 ~ 49673476 (-)
XLOC_033149 NA non-coding downstream 570609 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 non-coding downstream 907974 48612034 ~ 48612150 (-)
XLOC_033145 CU469362.1 non-coding downstream 1138901 48380245 ~ 48381223 (-)
XLOC_033163 NA non-coding upstream 233845 49760355 ~ 49771639 (-)
XLOC_033167 BX629346.2 non-coding upstream 391744 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding upstream 393426 49919936 ~ 49921857 (-)
XLOC_033171 CU928043.1 non-coding upstream 608809 50135319 ~ 50135437 (-)
XLOC_033172 NA non-coding upstream 833147 50359657 ~ 50380212 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G494710 NA unknown CI01000340 null 14213348 ~ 14320277 (-)