XLOC_033159 (ppp4r1l)


Basic Information

Item Value
gene id XLOC_033159
gene name ppp4r1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49541278 ~ 49547680 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064430
GTCTTATTTTTTTCCTCACCGAGCGTTCGGTTGAGTGATACGGGAATTTGCGCTATTTACTCGCTATAAAGTGCTTTGTTTCGTTGACTTCCTCTTTGTTTTATATGTACTCGATCTTCACATAGATGCCGGGATTGAAATAAGAGCAGGAAATCTTTTGAGGAAGTGGAGTGACAGCGCCGCTGTAAATCAAGATGGCAGGTCTGTCTTTATATTTTGAAGATGGTCATGATGATTTGGATGACTTTGGATTCGATGACTATGGTTCGGAGTGTGAAGGGATTCGGATAACAGCATTCCTGGATGCAGGCCAGGATAATCTCACCCCTCTGGGCCGGCTGGAGAAATATGCTTTCAGTGAAAACGTCTTCAACAGGCAAATTGTGGCTCGTGGATTGCTGGATGTTCTCCGGGAGTTCAGTGCTAATGAAAATGACTTCATCAGTGTCATGGAAACGGTTGCCAGGATGTCTGAGGATGGAGAACCGACAGTGCGAGCAGAGCTAATGGAACAGGTGCCAAACATTGCCATGTTCCTCCATGAAAATCGCCCCAATTTCCCAGAAGCTTTCTCACGGTACCTGGTTCCCATAGTGGTCCGCTATCTTACAGATCCTAATAATCAAGTTCGAAAGACGAGCCAGGCTGCTTTGCTGATACTACTTGAACAAGGTTTGATGAGTAAACCAGATATGGAAGGAAAGGTCTGCCCTGTGCTTCTGGAGCTCACTGAACCCAGTAGTGAAGACGACCTGAAGATCGAGGCTGTAGCG

Function

symbol description
ppp4r1l Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Orthologous to human PPP4R1L (protein phosphatase 4 regulatory subunit 1 like (pseudogene)).

GO:

id name namespace
GO:0008287 protein serine/threonine phosphatase complex cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121022-4 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Orthologous to human PPP4R1L (protein phosphatase 4 regulatory subunit 1 like (pseudogene)).

Ensembl:

ensembl_id ENSDARG00000099379

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064430 True 773 mRNA 0.46 6 49541278 49547680

Neighbor

gene id symbol gene type direction distance location
XLOC_033158 FO704848.1 coding downstream 3632 49529014 ~ 49537646 (-)
XLOC_033157 rps26l coding downstream 14768 49520124 ~ 49526510 (-)
XLOC_033156 rplp2 coding downstream 30725 49508805 ~ 49510553 (-)
XLOC_033155 BX569793.1 coding downstream 218746 49310908 ~ 49322532 (-)
XLOC_033154 ngfb coding downstream 325451 49169420 ~ 49215827 (-)
XLOC_033160 BX323459.2 coding upstream 37781 49585461 ~ 49655235 (-)
XLOC_033161 BX323459.1 coding upstream 80751 49628431 ~ 49634787 (-)
XLOC_033162 apcdd1l coding upstream 102490 49650170 ~ 49673476 (-)
XLOC_033163 NA coding upstream 212675 49760355 ~ 49771639 (-)
XLOC_033164 nelfcd coding upstream 234204 49781884 ~ 49801173 (-)
XLOC_033152 NA non-coding downstream 437086 49100879 ~ 49104192 (-)
XLOC_033149 NA non-coding downstream 591763 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 non-coding downstream 929128 48612034 ~ 48612150 (-)
XLOC_033145 CU469362.1 non-coding downstream 1160055 48380245 ~ 48381223 (-)
XLOC_033167 BX629346.2 non-coding upstream 370574 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding upstream 372256 49919936 ~ 49921857 (-)
XLOC_033171 CU928043.1 non-coding upstream 587639 50135319 ~ 50135437 (-)
XLOC_033172 NA non-coding upstream 811977 50359657 ~ 50380212 (-)

Expression


Co-expression Network