XLOC_033164 (nelfcd)


Basic Information

Item Value
gene id XLOC_033164
gene name nelfcd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49781884 ~ 49801173 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064436
ATCCAATGACGTATTATACACGCGCCGTTCGCTGTTCTTGCGCGAATGTTGTAAACAgtcattttgttttgtataaaataactacattttccCTCCTCAATGGACGAAGAATACTACAGCCATGCAGGAGAATGGGAAGCACAAGACGGCAGTATGGAGGATGGATACGGGGATGCTGAGGCTGACGGAAAAGTTCAGGAGGATTGTTTGCAGAAATTCTCCAGCAGAGACTACATCATGGAGCCCACCGTGTTTAACACCCTGAAATCGTATTTCCAGGCAGGTGGTTCACCTGAGCACGTGATTCAGCTCCTCTCGGAGAATTACTCTGCTGTCGCACAGACCGTCAATCTGCTGGCCGAGTGGCTCATTCAAATGGGTGTGGAGCCTGCTCAGGTGCAGGAGCGTGTAGAGAATCATTTAAAGAGTCTCTTGATCAAACATTTTGACCCTCAGAAAGCAGACTCTATTTTCACTGTGGAGGGAGAGACACCTGCATGGCTGGAGCAGATGATAGCTCACACAACATGGAGAGACCTGTTCTACAAACTAGCTGAAGCTCATCCAGACTGTCTGATGCTTAACTTCACTGTCAAGTTGATTTCAGATGCCGGATACCAAGGAGAGATCACAAGCGTTTCCACAGCCTGCCAACAGCTGGAGGTTTTCTCCAGAGTCCTGCGCACCTCTCTGGCCACACTGCTGGACGGAGGAGAACAAAACCTGGAGAAAAATCTGCCTGAATTTGCGAAAATGGTGTGTCACGGTGAACACACATACTTATTCGCTCAGGCCATGATGTCCATCCTTGCTCAGGAGGAGCAGGGCGGGTCAGCAATGAGGCGAATCGGACAGGAAGTACAGAAGTATGCACATGagagGGGACATGATGCCAGTCAGATCACATTGGCGCTGGGCACGGCTGCTGCATATCCGCGTGCATGCCAGGCTCTTGGTGCCATGCTGTCCAAAGGGGCTCTGAACCCAGCAGACATCACAGTCCTGTTCAAGATGTTCAGCAGTATGGATCCGCCTCCTGTAGAGCTGATTCGAGTTCCTGCCTTCTTAGATCTGTTCATGCAGTCACTATTCAAACCCGGAGCTAAAATCAACCAAGACCACAagcacaaatacatacacatattaGCGTACGCCGCTAGCGTTGTGGAGACATGGAAAAAGAACAAACGAGTGAATATAAATAAGGACGAGCTCAAGTCGACTTCTAAGGCCATTGAGACTGTTCATAATCTCTGCTGCAATGAAAACAAAGGAGCCACTGAGCTAGTAGCAGAGCTCAGCACGTTATACCAGTGCATAAGGTTTCCAGTGGTGGCCATGGGAGTGCTGAAGTGGGTGGACTGGACGGTGTCTGAGCCTCGTTACTTTCAGTTACAAACTGACCACACTCCTGTCCATCTGGCTCTGCTGGATGAGaTCAGCACCTGCCATCAGCTTCTCCATCCTCAGGTGCTGCAGTTGCTGATCAAGCTGTTTGAGACCGAACACTCGCAGCTTGACGTCATGGAGCAGATGGAGCTCAAGAAGACCCTGCTGGACCGCATGGTTCACCTGTTGAGTCGAGGTTATGTTCTTCCTGTCGTCGGCTACATCCGCAAATGTCTTGAAAAGCTCAACACTGATATTTCACTCATCAGATATTTTGTTACGGAGGTTCTGGACGTGATAGCGCCTCCATATACCTCAGACTTTGTCCAGCTGTTTTTGCCGATCCTAGAAAACGACAGCATAGCAGGAACAATCCGCACAGAAGGAGAAAACGATCCTGTGGCCGAGTTCATCGCTCACTGCAAATCCAACTTCATCATGATGAACTAATACATTCAGAAGAGTTGAGTGCTTCTccatggatggacagacggatgatTTCAGTGTACAGAGCTTTTGTGTTGAACTTCAGAAAGAAAATATTGACAAATGCTGAACTTTGAACATTTGTTTTGAGGTCAAAAGTCATGGAGgctttattttgctttaaatggCTTGTGATTTTGATTTTTGTACATtgaaatttttattaaacatgtttgTATTAACCTTATAAGAGTCATTATTTTCCAATCCAACCCCATCTGAGAAGATATATGTTCATTTTGCTATATATTTTATAGATATGTTGCTGATAGTAGCAGGTATTTGTCTTAAGTAAATGCAGTAGTTCATTTAATGAATGAAACTTTGAGCGGCAGCTTCactttttaatgatttttcagaacatttaactgaaaataataatagccgCCAATGAAGATTACATTTTTATATCCTCATCTGCTGTATTTGactgtcagtagctatgtttccatccagataggcaaattaaatttaaatttatgcgcaaaactggaacatCACATAAAAGAAGTgcaaagcagcgttttcatccagTGAGTCTAAGCGGACAATGagctggcaccaaatatcaacagtaaaattaGAATTTACTGTGGTAAGAAAAGCTGCGTGAATagtttcttcatttaataaatgacttgcgcttcAGAAGACAAATGCTGACATGCAATGAACGCG

Function

symbol description
nelfcd Predicted to enable RNA binding activity. Predicted to be involved in negative regulation of transcription elongation from RNA polymerase II promoter. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFCD (negative elongation factor complex member C/D).

GO:

id name namespace
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0032021 NELF complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-720 Predicted to enable RNA binding activity. Predicted to be involved in negative regulation of transcription elongation from RNA polymerase II promoter. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFCD (negative elongation factor complex member C/D).

Ensembl:

ensembl_id ENSDARG00000021097

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064436 True 2553 mRNA 0.45 15 49781884 49801173

Neighbor

gene id symbol gene type direction distance location
XLOC_033163 NA coding downstream 10245 49760355 ~ 49771639 (-)
XLOC_033162 apcdd1l coding downstream 108408 49650170 ~ 49673476 (-)
XLOC_033160 BX323459.2 coding downstream 126649 49585461 ~ 49655235 (-)
XLOC_033161 BX323459.1 coding downstream 147097 49628431 ~ 49634787 (-)
XLOC_033159 ppp4r1l coding downstream 234204 49541278 ~ 49547680 (-)
XLOC_033165 gnas coding upstream 10658 49811831 ~ 49873020 (-)
XLOC_033166 atp5f1e coding upstream 92315 49893488 ~ 49902140 (-)
XLOC_033167 BX629346.2 coding upstream 117081 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 coding upstream 118763 49919936 ~ 49921857 (-)
XLOC_033169 asip1 coding upstream 174737 49975910 ~ 49983329 (-)
XLOC_033155 BX569793.1 non-coding downstream 459352 49310908 ~ 49322532 (-)
XLOC_033152 NA non-coding downstream 677692 49100879 ~ 49104192 (-)
XLOC_033149 NA non-coding downstream 832369 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 non-coding downstream 1169734 48612034 ~ 48612150 (-)
XLOC_033171 CU928043.1 non-coding upstream 334146 50135319 ~ 50135437 (-)
XLOC_033172 NA non-coding upstream 558484 50359657 ~ 50380212 (-)
XLOC_033174 NA non-coding upstream 656795 50457968 ~ 50505438 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_14455602_14462035 NELFD, NELFCD coding CI01000340 null 14455602 ~ 14463807 (-)
bowfin (Amia calva) AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding CM030123.1 CM030123.1 38785536 ~ 38790785 (-)