XLOC_033174


Basic Information

Item Value
gene id XLOC_033174
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50457968 ~ 50505438 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065234
GTTTTTCAGTGTGCCCTgacctcagtgtgtgtgtgtgttcgtcctAGTGCTTTAGGCCGTTGTGAATCTGACAGAGGCGTTCACCTCCAGGAGCTCAGATCTGCACCCCCGCAGTGGAGGAAGCGGCCCCGAGGAAAGGCCTCATGCTGGAGGCTCAGGGGCCCTGCGGCTCCCCAACAATCACACTTCTTGGAAGATTCCTGGAAGCTTCACTGATTAACCATTCATCTTTTTTTCACGACAGCCAGCATGAACGTCACATTCACTATGAAAAAGAGATCAGACCTGAGGCCGTTCCCAGTGTCACTGGTGGGCTGAGGGTTAAAGATGAAACTCTCTGGAATCTCTGTCAGGACGTTTTACACCTTCCTATGCTGAAGAGCCTCAGGATGCCAGCATGACATGCACTGACATGTGTGTGCTCATCCACAGATGATGCAAGGTAACACTTACCACATTAATGCTGGCAATTAAATCAAGAAGAGAAAAAACTATCTGAAATCCTTAAGAAATCTAGAGATAGGGGCGGcacggtggatcagtggttagcactgttgcctcacagcaagaaggccgctacttcgagtctcagctgggtcagttggcatttctgtgtggagtttgcatgttctccctgtgttggtgtgggtgctctggtttctctcacagtccaaacacatgcgctataggtgaattgaataagctaaattggctgttgtgtatgagcatgaatgtgagagtgtatgggtgtttcccagtgatgggttgcagctggaaggctgtgtaaaacatatgctggataagttggtggttcattccgctgtggagacccctgatgaatcaagggactaagctgaaggaaagtgaaagaGATCATGCAGAATGTGTACtttagtactaataaacagccttAATAATGTTAATGATTGGCAGGTAATAAACTAAAGTGTCACGG
>TCONS_00064757
ATAAGTAAAGCATAagttttaatgtttctttattgtGCTTTTTGTCAGTATTTCAGCTCCTGACAATAACAAACAATGACCAGCACTTTCATAACATAAAGAGATCCTGTGATATTCTGCTAAACATCTCCTATTGTGTCCTGCAGAGGAAATAAGGCCAAATGGCATTATGCCTGAGAGGGAAGGGGGCTGAACCACCACAACAATTCCCCTGAAGAGGCGCTGGTCAGACCCCTGCAGATCTGGCTGACAGAGCGAGACCTCCGGCTGTCATGAGCCATTAACCTGCCAGAGACTCCAGGGAACACACACTCTGATGGAGGGGCGCACAAAAAAACAGGCCGTTGTGAATCTGACAGAGGCGTTCACCTCCAGGAGCTCAGATCTGCACCCCCGCAGTGGAGGAAGCGGCCCCGAGGAAAGGCCTCATGCTGGAGGCTCAGGGGCCCTGCGGCTCCCCAACAATCACACTTCTTGGAAGATTCCTGGAAGCTTCACTGATTAACCATTCATCTTTTTTTCACGACAGCCAGCATGAACGTCACATTCACTATGAAAAAGA
>TCONS_00065235
GGCTTCCATCTTCAGGCTTGTTGGTCATTCGCAGACCACACATGCTGGAAGGACGCTGGAATTACAGCAAAACAAGGGCAGAGCGGCCTGTCTCCTGACAATAACAAACAATGACCAGCACTTTCATAACATAAAGAGATCCTGTGATATTCTGCTAAACATCTCCTATTGTGTCCTGCAGAGGAAATAAGGCCAAATGGCATTATGCCTGAGAGGGAAGGGGGCTGAACCACCACAACAATTCCCCTGAAGAGGCGCTGGTCAGACCCCTGCAGATCTGGCTGACAGAGCGAGACCTCCGGCTGTCATGAGCCATTAACCTGCCAGAGACTCCAGGGAACACACACTCTGATGGAGGGGCGCACAAAAAAACAGGTTTCTTTAGCTGAGAGCCAATGGTTGAGTTGTATTTGTGTCATTAAAATTAAACagaacttattttaaatgaacataattaataatatgcaAGCAAAGCATTTCTCTAGACAAATTTCCATCATACTAAACATTTCCAACACACAGTATTGTGCAATAGTCTTAACAGTTTTTGTTGGTTTAAAACTTTACAAAACTGTATCCATAATCTTtttcagtctctttattaaaataaacatgaaagtaAAATAATCATAAACATAAAATAAGGAAAACACTCACACAAAGTGGCATATTATTGcaatattgcagcccaaaccatcactgatctaCTTCAATGCTTTACTCTGGGgatgcaacagtctgggtggtatgcttctttggggcatctccacaccgtaactctcccgggAAAAAATTGAAGGTGGAGTCAATCAGATTTCCgttgcttttttgtttatttatttgttttatatcataTTCAGAGTTATCTTTTTCTTTCCTAATGTTTTAGTTTACAATATTGTGGAATGGTTAGTTTTTCATTAGGTTATGTTCATGTTTGTTACTAGTTTAAATCTATATATGGACTTAAAAttccaaacaacaacaacaacaacagaaaaggAAATATTGGCTGCACATGTTAACATCTCGTTCTAAAAGAATACTCACACTAAAACTCACTTTTAAACCGAAAATAGCAATAATTATGACACTTCCTGTTATTGTAATGATGCATTTgacagtttaatatatttttaatgatcaactaattttaatattgctgtgatttttaacattattttatcgGTCTTACCACATTACATGACTTGTTTtatggaaatattttaaatttcttttgaCCAACTGACCAATAATTATAACATTCTGCCACAAGATTTTTTTCAGTACCTGCAACTAAGAGACATTGTGAAAAAGACACTACAATACTCGAAAATCA
>TCONS_00065236
ATGACGGAGAGAGCGAGTGAAAGAGATATTTCAGCTCCTGACAATAACAAACAATGACCAGCACTTTCATAACATAAAGAGATCCTGTGATATTCTGCTAAACATCTCCTATTGTGTCCTGCAGAGGAAATAAGGCCAAATGGCATTATGCCTGAGAGGGAAGGGGGCTGAACCACCACAACAATTCCCCTGAAGAGGCGCTGGTCAGACCCCTGCAGATCTGGCTGACAGAGCGAGACCTCCGGCTGTCATGAGCCATTAACCTGCCAGAGACTCCAGGGAACACACACTCTGATGGAGGGGCGCACAAAAAAACAGGTTTCTTTAGCTGAGAGCCAATGGTTGAGTTGTATTTGTGTCATTAAAATTAAACagaacttattttaaatgaacataattaataatatgcaAGCAAAGCATTTCTCTAGACAAATTTCCATCATACTAAACATTTCCAACACACAGTATTGTGCAATAGTCTTAACAGTTTTTGTTGGTTTAAAACTTTACAAAACTGTATCCATAATCTTtttcagtctctttattaaaataaacatgaaagtaAAATAATCATAAACATAAAATAAGGAAAACACTCACACAAAGTGGCATATTATTGcaatattgcagcccaaaccatcactgatctaCTTCAATGCTTTACTCTGGGgatgcaacagtctgggtggtatgcttctttggggcatctccacaccgtaactctcccgggAAAAAATTGAAGGTGGAGTCAATCAGATTTCCgttgcttttttgtttatttatttgttttatatcataTTCAGAGTTATCTTTTTCTTTCCTAATGTTTTAGTTTACAATATTGTGGAATGGTTAGTTTTTCATTAGGTTATGTTCATGTTTGTTACTAGTTTAAATCTATATATGGACTTAAAAttccaaacaacaacaacaacaacagaaaaggAAATATTGGCTGCACATGTTAACATCTCGTTCTAAAAGAATACTCACACTAAAACTCACTTTTAAACCGAAAATAGCAATAATTATGACACTTCCTGTTATTGTAATGATGCATTTgacagtttaatatatttttaatgatcaactaattttaatattgctgtgatttttaacattattttatcgGTCTTACCACATTACATGACTTGTTTtatggaaatattttaaatttcttttgaCCAACTGACCAATAATTATAACATTCTGCCACAAGATTTTTTTCAGTACCTGCAACTAAGAGACATTGTGAAAAAGACACTACAATACTCGAAAATCA
>TCONS_00065237
gcatCTATCCCTATGTACTTTCACTGAATGGAAACGAGCAGCCTGGAAATTCCCTAGAATGACAGTTTGGAACAACATAAGGAGGACCAAACAAAGAAAAGCCCACCACCCCACCGGACAGAGAgatagagtgagagagagagagagcgagggtTGGAATGACGGAGAGAGCGAGTGAAAGAGAGTGAGTCATGAGCGTAGCTTTGAAAAACAAGGGGAAATCCTCCTATTGAGAGTCTGCGCGGTGGAAACACACATCACTCATAGATGTAACGGAACTGGGGGCCATGTGCAAACCAAAACTGTTGATCTGGAGAGCGTCTTGACGTGGTGTTATGCAAAATGGTTGCAGTTTAAATAACAGAAAACTCTGATGCATGAACGCCGGTATATCGGTTTTATTTAGAAAGTGAAGTAATG

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0051179 localization biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065234 False 955 lncRNA 0.48 2 50457968 50476489
TCONS_00064757 False 562 lncRNA 0.49 3 50476213 50484398
TCONS_00065235 False 1339 lncRNA 0.36 3 50480139 50486505
TCONS_00065236 False 1282 lncRNA 0.35 3 50480139 50495883
TCONS_00065237 True 420 lncRNA 0.45 2 50495622 50505438

Neighbor

gene id symbol gene type direction distance location
XLOC_033173 romo1 coding downstream 53236 50401620 ~ 50404732 (-)
XLOC_033172 NA coding downstream 77756 50359657 ~ 50380212 (-)
XLOC_033170 raly coding downstream 253706 50021410 ~ 50204262 (-)
XLOC_033171 CU928043.1 coding downstream 322531 50135319 ~ 50135437 (-)
XLOC_033169 asip1 coding downstream 474639 49975910 ~ 49983329 (-)
XLOC_033175 mtss1 coding upstream 75502 50580940 ~ 50685862 (-)
XLOC_033176 osgn1 coding upstream 189943 50695381 ~ 50704689 (-)
XLOC_033177 pigu coding upstream 208362 50713800 ~ 50730749 (-)
XLOC_033178 BX530017.2 coding upstream 236877 50742315 ~ 50747545 (-)
XLOC_033179 BX530017.1 coding upstream 249063 50754501 ~ 50756448 (-)
XLOC_033167 BX629346.2 non-coding downstream 531651 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding downstream 536111 49919936 ~ 49921857 (-)
XLOC_033163 NA non-coding downstream 686329 49760355 ~ 49771639 (-)
XLOC_033181 NA non-coding upstream 1023325 51528763 ~ 51541488 (-)
XLOC_033186 NA non-coding upstream 1521053 52026491 ~ 52034656 (-)
XLOC_033198 BX649282.5 non-coding upstream 2417935 52923373 ~ 52923489 (-)

Expression


Co-expression Network