XLOC_033178 (BX530017.2)


Basic Information

Item Value
gene id XLOC_033178
gene name BX530017.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50742315 ~ 50747545 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064454
gtgacggcgacggccacatcgaagggctatgcgtcagcgccatagcatacgccggcgtttgacgcagaagtataaatcagccttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGGTATCTGAAGTTGAACTAACTGGAAGCAGGGAACCATACTAATAAAGTTCCTTAagcagTTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACTACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGCATTGGACTGTTTTTTTTGGCTTTGACCCTTGCTTGCCCCTGACCTCACTCTTGGACTGCCCTGTtggattttcagtttatttaatttaaaaaaaaaaatttggttctgggtagatgctaataaatatttaattgtaattatttaatgtaaatcaaaggcggcaacaccaaggctccaaaaatacaaatttattaaattaaaaaggctgacacagagcgtgtaacgtttcgagccgccggctcttcatcagacaaatTCTTTTtcgttgtaattttttaaataatatgtttttgttaaatattcgatttctgtgtttgttctgtctacTCGTACTTGTTTATCTTGTCTCTGTAATtatcatttgttaatttaattaatatgcattttataaaaaaaatatatatatatattttctgtgttttttttttctgtatctatttatctaatttgtatatacatttgtgtttgtatgtttttcttaTTCTGTATATCCACTTACctaattttaacttttatatttatttatttgcatttaatttgtgataattctgtatgcatttatttatctaattcatatatttatatgtattgcaTTGAtcaatctgttgttgttttttttgtatgcatctattaatataatttatataaattctatatttgtatttatcaatttatatgcttcctttaaagcaattttttaaataaagcaatttaaactaag
>TCONS_00064455
tgtaaatgttcctctgtgtcgagtttcttcgctacttttttgcttttcctgaacacttccgggatgtacaagtggctcaaactcgctcattttgaggcaggaaccggtggacgtacaacaactttaactatgagcagTTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACTACATCAAGATCTGCGGTC
>TCONS_00064456
ACGAGGAAGTGAAGTCAAGTCCGCCATTTCATCTTCTTCTTTTTATCggAATAGAAAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTTACTTCATCATCAAGCACACCagGTGGTGCGGTGCACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAAtgtttctggttcgagcctcggctgggtcagttggcatttctgtgtgaagtttgtatgttctccccgtgttggcgtgggtttcctccgggtgctcctgtttcccccacaagacatgcggtacaggtgaattggctcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGTTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACTACATCAAGATCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097807

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064454 False 1006 processed_transcript 0.31 3 50742315 50744929
TCONS_00064455 False 218 processed_transcript 0.44 2 50744160 50745255
TCONS_00064456 True 483 processed_transcript 0.47 6 50744165 50747545

Neighbor

gene id symbol gene type direction distance location
XLOC_033177 pigu coding downstream 11566 50713800 ~ 50730749 (-)
XLOC_033176 osgn1 coding downstream 37626 50695381 ~ 50704689 (-)
XLOC_033175 mtss1 coding downstream 56453 50580940 ~ 50685862 (-)
XLOC_033174 NA coding downstream 236877 50457968 ~ 50505438 (-)
XLOC_033173 romo1 coding downstream 337583 50401620 ~ 50404732 (-)
XLOC_033179 BX530017.1 coding upstream 6956 50754501 ~ 50756448 (-)
XLOC_033180 ptprt coding upstream 262436 51009981 ~ 51386696 (-)
XLOC_033181 NA coding upstream 781218 51528763 ~ 51541488 (-)
XLOC_033182 rbl1 coding upstream 801658 51549203 ~ 51573975 (-)
XLOC_033183 chd6 coding upstream 828379 51575924 ~ 51666739 (-)
XLOC_033172 NA non-coding downstream 362103 50359657 ~ 50380212 (-)
XLOC_033171 CU928043.1 non-coding downstream 606878 50135319 ~ 50135437 (-)
XLOC_033167 BX629346.2 non-coding downstream 815998 49918254 ~ 49926317 (-)
XLOC_033186 NA non-coding upstream 1278946 52026491 ~ 52034656 (-)
XLOC_033198 BX649282.5 non-coding upstream 2175828 52923373 ~ 52923489 (-)
XLOC_033199 BX649282.4 non-coding upstream 2285451 53032996 ~ 53033111 (-)
XLOC_033168 BX629346.1 non-coding downstream 820458 49919936 ~ 49921857 (-)

Expression


Co-expression Network