XLOC_033175 (mtss1)


Basic Information

Item Value
gene id XLOC_033175
gene name mtss1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50580940 ~ 50685862 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064449
GCCCCTTTTTGAGTTCGTCCGCGAGCCGATCCACACAAACGAGCGCGAGGGAGAGAGAGCCAGCGGTGAATAATGTTTACCACTCACTCACTCTGTGGAATCTATCAGGAGTCGAAAGTTTAGTCAGTTTTGGCCGCATTCATTTCACCAGAAAGCCTCGTTTAAACTGCAACCGTTTAAAATCATCACAACTAAGGATTTATCAGCGGCTGGATCGACTGAATGAAACCATGAGGAATAAAAAATACGGCGGTTGTTGCGACCTAAACTAACGTGACTATCGATCTAGCAGAGCCAAGCTTTTGAAAACGCCGAGCCAGGTACTTCGACTTTTCAACGGTCGCATTTTTCTGCGGGTTTACCTGCGCTTACGTGGCACTTTTTTGACCTGGAGACTTATTATTAAAAATCacgtttttagttatttttatccTCTTTTATCGTGGCGATGCGAGGTATTTTCAGAGGTTTAGTAAGTTGCGTGGCCGGGACTAGTTTGCTTGCGCCGGGCAGCCAATCAGCGGAATAACACTCACTGTTTTTGCATTAATTTATCACATTTTGCCTTATTCACACGATAACcttcaaaaacagatttccacCGCGCCCTTCAGATATTGACAGCGGTTTTCGAGGTGAGCTTTCGCAGGCAGGAGAAGTGTCAGCGCTGCGCGTGTGCTTTTGGGCTGGTAAAATGGATGCGGGAATGGAGAAGGAGTGCAGCGCTTTGGGAGGGCTCTTCCAAATCATCATGAACGACATGAAGGCCAGTTATCCTGCTTGGGAGGACTTTGTCACCAAAGGGGCTAAGCTGCAATCTCAGTTAAGGACAACAATCATCGTCACTAGCTCATTCCTGGACGCTTTCCAGAAAGTGGCTGACATTGCAACTGGAACACGAGGAGCAACAAAAGAAATCGGATCAGCTTTAACCAGAATGTGTATGAGGCACCGAAGCATTGAGAACAAGCTCAAACTGTTCACGACggcTCTTATGGATAACCTGATCACTCCTCTGGAGCTGAAAATTGAAGAGTGGAAAAAGGTTGCCAGTCAGCTGGATAAAGACCATGCCAAAGAATATAAAAAAGCACGTTCAGAGATCAAAAAGAAATCTTCGGACACGATCAAACTGCAGAAGAAAGTCAAAAAAGGTAAAGATGAAGTGCGGATGCAGCTGGACAGCGCTCTTCAGGACGTCAACACACGCTACGCTGTCTTAGAGGAGACCGAGAAGAGAGCTGTGTGTCGAGCTCTTATTGAGGAAAGAGGAAGATTCTGCTCCTTCGTCACAATGCTCAAACCTGTCCTGGATGAAGAGATAAGCATGCTTGGCGAAGTCACTCACTTACAGACAATTCTAGAAGATCTTGGCAACCTAACGGCTGATCCCAACACGCTGCCTCCTGCTAGTGAACAGGTTATTCTTGATCTGAAAGGCTCTGACTACATCTACTCGTATCAGACTCCACCCGCATCTCCTAGCAACACATTGTCACGCAAGAGCAGCATCAGCAGTAACTACACGTCTGTGCGTCACGTCCCGTCTCTGGACTCCATCTCCAGTGCTGTGGACGGGCTTCACCTGCGAGCACCAGACATTACACAGGATCAAGGTCAGAACTCTCCTGGCACAGAAAATGGCACCTCCATGCCTCCTCTGCACAAAATTTACAGCGGGCATGAGGAGAGAGTCAGGACACTGTCCTCCTCGGGCAAGCCACAGTCAGCTCGAGAGCAGCTGGCTCTTACTCTAGGAGGAGGACTTAATTCTGAAGCTCCTCGAACCAGCAGGGATTCCCTTCACTGCTCCAGCGGATACAGCACTCAGACCACCACGCCATCCTGCTCTGAAGACACCATCCCGTCACAGCACGTGATAAAGAAAGAACCTCCTCTATATGACTATGACTACATCTCTCTGCATGGAGGAGAGGATGCTCACAGCCAGTCTGATTTTGATAAATCTTCCACAATTCCTCGCAACAGTGACCTGAGTCTCAATTACCGCAAAATGTTTCAAAGCAAGAGGCCGGCATCTACCGTCAGTCTGCTGATGGATCCAGAGCCTTTAGGTCCTCACACAGCCACCATCCGCCGTAAACCCTCCAGCAAGCCCAACATCCGCAGAGGAACCATCAGTGGAGGCGTCCCTATACCCATCTCCACACCGCAGGTGCCTCTGAAGGCGTCCATTTCTACCGCTGGCCTGAGTGGCAGTGATGACATCACATGTCCTCCTGGAGTGACCCAAAGCAACAGAGTGCCCGGCTCCGATTTAGCTCACGCCAGGCATAATCTGTGTACGTCCACTCAAAGTCTGAGCGCGATGCCGCCTCCATACTATTCCATGTTCCCCGGGCAGCCACCAGTGGGCAGCACAGAGCCGCTGTATCAAATGAGCAAGCAACAGCAGTTCACACTACACCAACAACAACAGAGGCAGTATCAGCAGCAACAACAGCAACATTACAACCAAAAGCAATACAATCAATACAATCACCAACAGCAATACAATCAAGAGCCGCAGTATCAACAGATCCATCACAAAGAGCTCCAGCAGAAACTCAAACATCAAGTTCAGCAGCAGGTTCAAAACACGCTAGCTCACAATTCCGGCATGCCAAGTGAAAGCGGGCTGAATAACTCAGCTCAGCCTGGCGTGGATCATACAGACGGCGCTCCTGAACCGAGCAGCGGTGGAGGAGATATGTTAAGTATGATACGTAGAGGAGTGAAACTTCGAAGGACACTTACCAACGATCGTTCGGCGCCTTTAATCACGCCTAACTATCTCAATTGATTCAATTTTTTTTCGTTGAATTCGTCTGTGGCTTTTTTCCGTTTAGTGAATTCGTTCGAGCTTTTTCTTGTTgcgattttgtgtgtttttgttttttaagtggaGGCAAAACTGTTGACGATTCTTGCCACTCGAAAAGACGTTCGATTTAAGTACACTGTGCTCTAAGAACAAACGTTTTGCAGCGTCCCTGCGAATGTCGCCTCTTAATAAAGTTGATTCTGCAGGCTACGTGctttacatatatatgtatacttatatatacagatatatatgtATTTAGAGATCTAGATTGACCGTCGGAGCTTAAAGATATATTAAAGTTATTTGTTTATGTCGTATTCGTAAGCACTCAGCCTTCTGGTTAGAGATCAAAAAACTTGTGTATATATTAGCGAAACTATGGAAAGACTGTTGTATTATTCACCTCTTTGTTTCTCGTTTGTTTTGGAGATTAGATAAAGCAGCACTAGGCGTCTATTTTTGTACAGTTTAGGGTAACTGAAAACTGCACCACTGCCTTTAATCCACCCAATGTCTGTAAAACGGATTCAGCCAATGAGTGGAGAGGAGGGGAGGGACCGAGCGTTGTGATTGGGTGGATGAATGAAGGACTGGATTATAGTGGATCATATTTGGGTTGCTTATGACTGTGAGAGCTTACGAAGGCATCACTGTGGTTATTTATTCAACCTGTTTGATTCTCAATCATTTTTAATCGTTTGTTCGTTTACCAAAGCTTTGACGCTGTAGCCCCGTAGTAGATGCATATAAATTTGCTCTCCTGGAGGATTTATTATAAAGACTCAATTCATAAAACCTCAAACTTGTGGCCTATGACTTTTTTTTTGGaggcaatgttttgtttttgtattagaaTCAAAGACATTTCTTGAAACAATTGTACTGTTCCTGGAAGGAACGTGAATGATTAGTTTTGTAGATTgaactcttgttttttttttgttcttgtttttttgttgcaAAATGCCTTGGAAGTCAAAAGTGCTCCATTTATCTAATTTAAATAAACCGTATTGAATGG
>TCONS_00064450
GACTTAATTCTGAAGCTCCTCGAACCAGCAGGGATTCCCTTCACTGCTCCAGCGGATACAGCACTCAGACCACCACGCCATCCTGCTCTGAAGACACCATCCCGTCACAGCACGACTATGACTACATCTCTCTGCATGGAGGAGAGGATGCTCACAGCCAGTCTGATTTTGATAAATCTTCCACAATTCCTCGCAACAGTGACCTGAGTCTCAATTACCGCAAAATGTTTCAAAGCAAGAGGCCGGCATCTACCGTCAGTCTGCTGATGGATCCAGAGCCTTTAGGTCCTCACACAGCCACCATCCGCCGTAAACCCTCCAGCAAGC

Function

symbol description
mtss1 Predicted to enable actin binding activity. Predicted to act upstream of or within plasma membrane organization. Orthologous to human MTSS1 (MTSS I-BAR domain containing 1).

GO:

id name namespace
GO:0007009 plasma membrane organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-081105-141 Predicted to enable actin binding activity. Predicted to act upstream of or within plasma membrane organization. Orthologous to human MTSS1 (MTSS I-BAR domain containing 1).

Ensembl:

ensembl_id ENSDARG00000059604

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064449 False 3848 mRNA 0.45 15 50580940 50685862
TCONS_00064450 True 327 processed_transcript 0.52 2 50585502 50587730

Neighbor

gene id symbol gene type direction distance location
XLOC_033174 NA coding downstream 75502 50457968 ~ 50505438 (-)
XLOC_033173 romo1 coding downstream 176208 50401620 ~ 50404732 (-)
XLOC_033172 NA coding downstream 200728 50359657 ~ 50380212 (-)
XLOC_033170 raly coding downstream 376678 50021410 ~ 50204262 (-)
XLOC_033171 CU928043.1 coding downstream 445503 50135319 ~ 50135437 (-)
XLOC_033176 osgn1 coding upstream 9519 50695381 ~ 50704689 (-)
XLOC_033177 pigu coding upstream 27938 50713800 ~ 50730749 (-)
XLOC_033178 BX530017.2 coding upstream 56453 50742315 ~ 50747545 (-)
XLOC_033179 BX530017.1 coding upstream 68639 50754501 ~ 50756448 (-)
XLOC_033180 ptprt coding upstream 324119 51009981 ~ 51386696 (-)
XLOC_033167 BX629346.2 non-coding downstream 654623 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding downstream 659083 49919936 ~ 49921857 (-)
XLOC_033181 NA non-coding upstream 842901 51528763 ~ 51541488 (-)
XLOC_033186 NA non-coding upstream 1340629 52026491 ~ 52034656 (-)
XLOC_033198 BX649282.5 non-coding upstream 2237511 52923373 ~ 52923489 (-)

Expression


Co-expression Network