XLOC_033170 (raly)


Basic Information

Item Value
gene id XLOC_033170
gene name raly
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50021410 ~ 50204262 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064444
TAAAGTTTTAATTCTGTTCTCCCTCAAACAAAAAAGTTATGGACTCACcttatgttattaaaaaaaacagaaacaatcacAGAAATTCAACaagtataattaaaatattagaaaCCATTAACATTTAGGCTAACAATTAAAGCCagtaaattttaatgtttttttctagtGTGCTTTGGAGCAGATTCCATTAGGATTTTGCAGATATAACGTGACACCAATAGAAAGAAACAAATTACCAGTAGAAACCCATGGGAACCGTTACAGTTTCCATTCAAACCAATACAACTCCCATTATAGCATTAAACCCATTACCAATTCAGTGAGGGTTTCTATTGTTTATTTCACCCGGAACGACCTCTTAGTTTTATGTGAGTAAATATCACTTCAGTGCTATTCTTCAAAACACTCCCCCAATTACTTACATATAAAACTTTGTAATTAGCCAACGACCGAGTTTAATTGCTTACTTAATACCTTTATGTAGGCTAGAGATATCACGCGTCTCCCCCTGCGCAGTCGCAATGGTTTGCTCCACACCAGCGCTGTTTATACTGTTGAAACGCAGCTTTCCACAGTCACTGCACCGCTGACAGCTCCTCTCGCTCACTCTCTTCTTGTTGCTCTTTCCACATTTTTGCTCTCTGACATTTTCTCCGGATCCCTCACACACTCCAGGTCACAAGCGCTGGGACCACGCAGCACATCCACACCCATCCCCCGGCCACAGAAGAGATCTGAGAGATTGGAGTTCACATCTAATCCAGGATGTCACTGAAAGTCCAGACGAGCAACATCACCAACAAAAATGACCCCAAATCTATCAACTCACGTGTGTTTATCGGCAATCTGAACACAGCAGTGGTGAAGAAGAGCGACGTCGAGACCATCTTCTCCAAATACGGCCGCGTGTTGGGCTGCTCGGTCCATAAAGGCTACGCTTTTGTTCAGTATGCTAACGAGAGACACGCGCGTGGAGCCGTCATTGGAGAAAATGGACGCGTGCTTGCTGGACAAACCCTCGATATTAACATGGCAGGTGAACCAAAACCCAACAGGCCTAAAGGACTAAAGAGATCTGCAGCGACGTTATACAGTGGTTATGATTTTGACTATGATTACTACAGAGATGACTTCTATGACAGATTGTTCGAGTATCGAGGCAGAGTTTCTCCGGTGCCAAGAGCGGTCCCAGTAAAGCGCCCTCGTGTGGCAGTGCCAGTCGTCCGCAGGGTGAAGTCATTACCCGTCAAACTCCTGACCAGATCCGCTATCCTTCCCAACAGCTCTGTCAAACACAAGCTGAAATCCACCGAGCTGCAGGCTATCAAATCAGAACTGACGCAGATTAAGTCCAACATCGACGCACTGCTGGGGCGTCTTGACCAGATCACAGAGGACAAATACTGCAGCACAGAGTTGCAGAAGGCGGAGGACCTGAAGAGTGAAGCGTCTCAGGACGAGTCGGGCTCCGAATCGGAGGATCTGCAGCACAGCGACGTGGAGGAGGGAGAAGACCACACACACGAGGAGTGTGACGACGACATGGAAAACAATCACATATCTGAAATGGATCCCATTCTCCAATAAAAGGCAAGAACTCAGAGCTGGGACAGTGGATTCCTGGATCACGCAGGGAGTTGGAAAACACTGTCGACTGGAAACTTTTTTAATACCACAGACTCAGCGGGAAGACACTGAAACCAACAGGCGCCGTCAAAACTCCAGCATCAGCTGTCAATGAGACGGACAACCAAACTAGTTGCTTGCTAGGAGATTGTGTGGGTGACGTCCTACGAAACCAGGAATCCATAACAAAACGGTCACAGTTCCTGAGAGCAACAGCTTCAACACACACAACAACTCAAGTGGATCCATTTCAGACAGTCTGCATTCACAGTCAATCAACATTGCATCTTTTCTACACATTTGAGGCGCCTCATATATGTAAATACCCTCGTTCCTGTTTCTGTTCCTCCTTCCTTCCTGTCTGTTTGTGCTTTTCCAGAAatgttttttggttttatttatacgCCAGTCGGAAATAAGAAGGGTTGGCTATTTTTAATTACATGTGCATATTTATTTCTGCTTGCACTTTCGAGACTGCAAGAGATATTTACAGATGTAAATAAAACTATGACTTGTGAAGCATCGTTCTCTGTGTTTAAATGAAGTTTAGACTAATCCTTGGTGCTTTGTATAATACTTTGCTTTTTGTAAGACGAGCGATTTATTCTGACTGTGTCGGGTTTGccactaagaggattatagaagATGCTACTTCTTGAAATATGAATAACTCTTGTTGAGCTCTGGACGAGAGAGACAGTTGCTATGTTTCCATCTTAAAATgccaattaaatttatgcgcaaaacagacatattgcataaaagacgtgcgaataaagcagcgtttgcAACCAACGACTCAAAGAGagtaaaatcgtcacttcctgattaactggcgccaaatactaacagtaaaaacagaattttctgcaataggagaagctgcgtcaatgttctctttatttaataaataactttcaCCTCAGAAGAAGATGGCAACACGCTAGACGAAAGCGAAGAAAGCTGTTGGGCCCATAATGGTTTTTCTGGGGGACCAAAGAAGCAGCCCTGTTGATTGTAAGGAGTATGAATGGATCTTGGATGTACCACATCTggcattttgtcatgatcacataaCCTACCCGTGTCAGTTGTGCTGCTTCACTTACGTTTATGAATTATCTTgtagggcatcatgggatagcgcagcgtgcatcgGATGCGCTCTTCAGAATCTCGTTGGAAGCAGTAGATCATCCAGGTACTTTGcgcatactgttttttgaattctGTCTGCGTCTGAAATCGCATATTCCAAA
>TCONS_00064445
ACTGCACCGCTGACAGCTCCTCTCGCTCACTCTCTTCTTGTTGCTCTTTCCACATTTTTGCTCTCTGACATTTTCTCCGGATCCCTCACACACTCCAGGTCACAAGCGCTGGGACCACGCAGCACATCCACACCCATCCCCCGGCCACAGAAGAGATCTGAGAGATTGGAGTTCACATCTAATCCAGGATGTCACTGAAAGTCCAGACGAGCAACATCACCAACAAAAATGACCCCAAATCTATCAACTCACGTGTGTTTATCGGCAATCTGAACACAGCAGTGGTGAAGAAGAGCGACGTCGAGACCATCTTCTCCAAATACGGCCGCGTGTTGGGCTGCTCGGTCCATAAAGGCTACGCTTTTGTTCAGTATGCTAACGAGAGACACGCGCGTGGAGCCGTCATTGGAGAAAATGGACGCGTGCTTGCTGGACAAACCCTCGATATTAACATGGCAGGTGAACCAAAACCCAACAGGCCTAAAGGACTAAAGAGATCTGCAGCGACGTTATACAGTGGTTATGATTTTGACTATGATTACTACAGAGATGACTTCTATGACAGATTGTTCGAGTATCGAGGCAGAGTTTCTCCGGTGCCAAGAGCGGTCCCAGTAAAGCGCCCTCGTGTGGCAGTGCCAGTCGTCCGCAGGGTGAAGTCATTACCCGTCAAACTCCTGACCAGATCCGCTATCCTTCCCAACAGCTCTGTCAAACACAAGCTGAAATCCACCGAGCTGCAGGCTATCAAATCAGAACTGACGCAGATTAAGTCCAACATCGACGCACTGCTGGGGCGTCTTGACCAGATCACAGAGGACAAATACTGCAGCACAGAGTTGCAGAAGGCGGAGGACCTGAAGAGTGAAGCGTCTCAGGACGAGTCGGGCTCCGAATCGGAGGATCTGCAGCACAGCGACGTGGAGGAGGGAGAAGACCACACACACGAGGAGTGTGACGACGACATGGAAAACAATCACATATCTGAAATGGATCCCATTCTCCAATAAAAGCAGGGAGTTGGAAAACACTGTCGACTGGAAACTTTTTTAATACCACAGACTCAGCGGGAAGACACTGAAACCAACAGGCGCCGTCAAAACTCCAGCATCAGCTGTCAATGAGACGGACAACCAAACTAGTTGCTTGCTAGGAGATTGTGTGGGTGACGTCCTACGAAACCAGGAATCCATAACAAAACGGTCACAGTTCCTGAGAGCAACAGCTTCAACACACACAACAACTCAAGTGGATCCATTTCAGACAGTCTGCATTCACAGTCAATCAACATTGCATCTTTTCTACACATTTGAGGCGCCTCATATATGTAAATACCCTCGTTCCTGTTTCTGTTCCTCCTTCCTTCCTGTCTGTTTGTGCTTTTCCAGAAatgttttttggttttatttatacgCCAGTCGGAAATAAGAAGGGTTGGCTATTTTTAATTACATGTGCATATTTATTTCTGCTTGCACTTTCGAGACTGCAAGAGATATTTACAGATGTAAATAAAACTATGACTTGTGAA
>TCONS_00064446
ACTGCACCGCTGACAGCTCCTCTCGCTCACTCTCTTCTTGTTGCTCTTTCCACATTTTTGCTCTCTGACATTTTCTCCGGATCCCTCACACACTCCAGGTCACAAGCGCTGGGACCACGCAGCACATCCACACCCATCCCCCGGCCACAGAAGAGATCTGAGAGATTGGAGTTCACATCTAATCCAGGATGTCACTGAAAGTCCAGACGAGCAACATCACCAACAAAAATGACCCCAAATCTATCAACTCACGTGTGTTTATCGGCAATCTGAACACAGCAGTGGTGAAGAAGAGCGACGTCGAGACCATCTTCTCCAAATACGGCCGCGTGTTGGGCTGCTCGGTCCATAAAGGCTACGCTTTTGTTCAGTATGCTAACGAGAGACACGCGCGTGGAGCCGTCATTGGAGAAAATGGACGCGTGCTTGCTGGACAAACCCTCGATATTAACATGGCAGGTGAACCAAAACCCAACAGGCCTAAAGGACTAAAGAGATCTGCAGCGACGTTATACAGATTGTTCGAGTATCGAGGCAGAGTTTCTCCGGTGCCAAGAGCGGTCCCAGTAAAGCGCCCTCGTGTGGCAGTGCCAGTCGTCCGCAGGGTGAAGTCATTACCCGTCAAACTCCTGACCAGATCCGCTATCCTTCCCAACAGCTCTGTCAAACACAAGCTGAAATCCACCGAGCTGCAGGCTATCAAATCAGAACTGACGCAGATTAAGTCCAACATCGACGCACTGCTGGGGCGTCTTGACCAGATCACAGAGGACAAATACTGCAGCACAGAGTTGCAGAAGGCGGAGGACCTGAAGAGTGAAGCGTCTCAGGACGAGTCGGGCTCCGAATCGGAGGATCTGCAGCACAGCGACGTGGAGGAGGGAGAAGACCACACACACGAGGAGTGTGACGACGACATGGAAAACAATCACATATCTGAAATGGATCCCATTCTCCAATAAAAGGCAAGAACTCAGAGCTGGGACAGTGGATTCCTGGATCACG

Function

symbol description
raly Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-041010-127 Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein).

Ensembl:

ensembl_id ENSDARG00000059972

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064444 False 2891 mRNA 0.44 10 50021410 50204262
TCONS_00064445 False 1531 mRNA 0.48 10 50022150 50203682
TCONS_00064446 True 1005 mRNA 0.52 8 50027209 50203682

Neighbor

gene id symbol gene type direction distance location
XLOC_033169 asip1 coding downstream 38081 49975910 ~ 49983329 (-)
XLOC_033167 BX629346.2 coding downstream 95093 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 coding downstream 99553 49919936 ~ 49921857 (-)
XLOC_033166 atp5f1e coding downstream 119270 49893488 ~ 49902140 (-)
XLOC_033165 gnas coding downstream 148390 49811831 ~ 49873020 (-)
XLOC_033172 NA coding upstream 155395 50359657 ~ 50380212 (-)
XLOC_033173 romo1 coding upstream 197358 50401620 ~ 50404732 (-)
XLOC_033174 NA coding upstream 253706 50457968 ~ 50505438 (-)
XLOC_033175 mtss1 coding upstream 376678 50580940 ~ 50685862 (-)
XLOC_033176 osgn1 coding upstream 491119 50695381 ~ 50704689 (-)
XLOC_033163 NA non-coding downstream 249771 49760355 ~ 49771639 (-)
XLOC_033155 BX569793.1 non-coding downstream 698878 49310908 ~ 49322532 (-)
XLOC_033152 NA non-coding downstream 917218 49100879 ~ 49104192 (-)
XLOC_033178 BX530017.2 non-coding upstream 538053 50742315 ~ 50747545 (-)
XLOC_033179 BX530017.1 non-coding upstream 550239 50754501 ~ 50756448 (-)
XLOC_033181 NA non-coding upstream 1324501 51528763 ~ 51541488 (-)

Expression


Co-expression Network